Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17170

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17165 and ABZR87_RS17170 are separated by 131 nucleotidesABZR87_RS17170 and ABZR87_RS17175 are separated by 19 nucleotides ABZR87_RS17165: ABZR87_RS17165 - diguanylate cyclase, at 196,082 to 197,731 _RS17165 ABZR87_RS17170: ABZR87_RS17170 - acyl-CoA thioesterase, at 197,863 to 198,369 _RS17170 ABZR87_RS17175: ABZR87_RS17175 - sensor histidine kinase, at 198,389 to 199,774 _RS17175 Position (kb) 197 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 197.161 kb on + strand, within ABZR87_RS17165at 197.330 kb on + strand, within ABZR87_RS17165at 197.331 kb on - strand, within ABZR87_RS17165at 197.331 kb on - strand, within ABZR87_RS17165at 197.342 kb on + strand, within ABZR87_RS17165at 197.342 kb on + strand, within ABZR87_RS17165at 197.343 kb on - strand, within ABZR87_RS17165at 197.343 kb on - strand, within ABZR87_RS17165at 197.561 kb on + strand, within ABZR87_RS17165at 197.561 kb on + strand, within ABZR87_RS17165at 197.562 kb on - strand, within ABZR87_RS17165at 197.562 kb on - strand, within ABZR87_RS17165at 197.562 kb on - strand, within ABZR87_RS17165at 197.562 kb on - strand, within ABZR87_RS17165at 197.648 kb on + strandat 197.649 kb on - strandat 197.649 kb on - strandat 197.674 kb on + strandat 197.674 kb on + strandat 197.674 kb on + strandat 197.674 kb on + strandat 197.729 kb on + strandat 197.730 kb on - strandat 197.750 kb on + strandat 197.751 kb on - strandat 197.766 kb on + strandat 197.767 kb on - strandat 197.767 kb on - strandat 197.857 kb on + strandat 197.857 kb on + strandat 197.858 kb on - strandat 197.858 kb on - strandat 197.902 kb on + strandat 197.902 kb on + strandat 197.903 kb on - strandat 197.971 kb on + strand, within ABZR87_RS17170at 197.971 kb on + strand, within ABZR87_RS17170at 197.971 kb on + strand, within ABZR87_RS17170at 197.971 kb on + strand, within ABZR87_RS17170at 197.972 kb on - strand, within ABZR87_RS17170at 197.972 kb on - strand, within ABZR87_RS17170at 198.000 kb on + strand, within ABZR87_RS17170at 198.001 kb on - strand, within ABZR87_RS17170at 198.001 kb on - strand, within ABZR87_RS17170at 198.001 kb on - strand, within ABZR87_RS17170at 198.004 kb on + strand, within ABZR87_RS17170at 198.004 kb on + strand, within ABZR87_RS17170at 198.004 kb on + strand, within ABZR87_RS17170at 198.004 kb on + strand, within ABZR87_RS17170at 198.005 kb on - strand, within ABZR87_RS17170at 198.005 kb on - strand, within ABZR87_RS17170at 198.005 kb on - strand, within ABZR87_RS17170at 198.005 kb on - strand, within ABZR87_RS17170at 198.202 kb on + strand, within ABZR87_RS17170at 198.202 kb on + strand, within ABZR87_RS17170at 198.203 kb on - strand, within ABZR87_RS17170at 198.203 kb on - strand, within ABZR87_RS17170at 198.203 kb on - strand, within ABZR87_RS17170at 198.203 kb on - strand, within ABZR87_RS17170at 198.250 kb on + strand, within ABZR87_RS17170at 198.329 kb on - strandat 198.394 kb on + strandat 198.432 kb on + strandat 198.432 kb on + strandat 198.433 kb on - strandat 198.433 kb on - strandat 198.433 kb on - strandat 198.612 kb on + strand, within ABZR87_RS17175at 198.612 kb on + strand, within ABZR87_RS17175at 198.612 kb on + strand, within ABZR87_RS17175at 198.612 kb on + strand, within ABZR87_RS17175at 198.612 kb on + strand, within ABZR87_RS17175at 198.612 kb on + strand, within ABZR87_RS17175at 198.613 kb on - strand, within ABZR87_RS17175at 198.613 kb on - strand, within ABZR87_RS17175at 198.613 kb on - strand, within ABZR87_RS17175at 198.708 kb on + strand, within ABZR87_RS17175at 198.708 kb on + strand, within ABZR87_RS17175at 198.708 kb on + strand, within ABZR87_RS17175at 198.709 kb on - strand, within ABZR87_RS17175at 198.709 kb on - strand, within ABZR87_RS17175at 198.798 kb on + strand, within ABZR87_RS17175at 198.798 kb on + strand, within ABZR87_RS17175at 198.798 kb on + strand, within ABZR87_RS17175at 199.024 kb on - strand, within ABZR87_RS17175at 199.084 kb on + strand, within ABZR87_RS17175at 199.085 kb on - strand, within ABZR87_RS17175at 199.085 kb on - strand, within ABZR87_RS17175at 199.120 kb on - strand, within ABZR87_RS17175at 199.120 kb on - strand, within ABZR87_RS17175at 199.215 kb on + strand, within ABZR87_RS17175at 199.216 kb on - strand, within ABZR87_RS17175at 199.228 kb on - strand, within ABZR87_RS17175at 199.228 kb on - strand, within ABZR87_RS17175at 199.320 kb on + strand, within ABZR87_RS17175at 199.321 kb on - strand, within ABZR87_RS17175at 199.366 kb on + strand, within ABZR87_RS17175at 199.367 kb on - strand, within ABZR87_RS17175

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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197,161 + ABZR87_RS17165 0.65 -0.1
197,330 + ABZR87_RS17165 0.76 +0.1
197,331 - ABZR87_RS17165 0.76 -0.5
197,331 - ABZR87_RS17165 0.76 +2.0
197,342 + ABZR87_RS17165 0.76 -0.7
197,342 + ABZR87_RS17165 0.76 +1.6
197,343 - ABZR87_RS17165 0.76 -1.7
197,343 - ABZR87_RS17165 0.76 -0.0
197,561 + ABZR87_RS17165 0.90 +0.4
197,561 + ABZR87_RS17165 0.90 +0.2
197,562 - ABZR87_RS17165 0.90 -0.2
197,562 - ABZR87_RS17165 0.90 -0.3
197,562 - ABZR87_RS17165 0.90 +0.3
197,562 - ABZR87_RS17165 0.90 -0.2
197,648 + -0.4
197,649 - -0.1
197,649 - +0.6
197,674 + +0.7
197,674 + -2.0
197,674 + +0.5
197,674 + +0.2
197,729 + -1.2
197,730 - -1.6
197,750 + +0.5
197,751 - -0.4
197,766 + +1.0
197,767 - -0.6
197,767 - -0.5
197,857 + +0.3
197,857 + +0.5
197,858 - -0.2
197,858 - +0.2
197,902 + -0.4
197,902 + +1.0
197,903 - -1.3
197,971 + ABZR87_RS17170 0.21 -0.7
197,971 + ABZR87_RS17170 0.21 -0.1
197,971 + ABZR87_RS17170 0.21 +2.2
197,971 + ABZR87_RS17170 0.21 +0.2
197,972 - ABZR87_RS17170 0.21 -0.1
197,972 - ABZR87_RS17170 0.21 -0.1
198,000 + ABZR87_RS17170 0.27 -0.6
198,001 - ABZR87_RS17170 0.27 +0.4
198,001 - ABZR87_RS17170 0.27 +1.0
198,001 - ABZR87_RS17170 0.27 +0.0
198,004 + ABZR87_RS17170 0.28 +0.7
198,004 + ABZR87_RS17170 0.28 +2.0
198,004 + ABZR87_RS17170 0.28 +1.0
198,004 + ABZR87_RS17170 0.28 +0.4
198,005 - ABZR87_RS17170 0.28 -0.3
198,005 - ABZR87_RS17170 0.28 +0.7
198,005 - ABZR87_RS17170 0.28 +0.5
198,005 - ABZR87_RS17170 0.28 +0.3
198,202 + ABZR87_RS17170 0.67 +0.5
198,202 + ABZR87_RS17170 0.67 -1.3
198,203 - ABZR87_RS17170 0.67 -0.5
198,203 - ABZR87_RS17170 0.67 -0.2
198,203 - ABZR87_RS17170 0.67 -1.3
198,203 - ABZR87_RS17170 0.67 -0.1
198,250 + ABZR87_RS17170 0.76 -0.4
198,329 - -0.6
198,394 + -0.6
198,432 + -0.6
198,432 + +1.0
198,433 - -0.3
198,433 - +0.3
198,433 - +0.3
198,612 + ABZR87_RS17175 0.16 -1.6
198,612 + ABZR87_RS17175 0.16 +0.1
198,612 + ABZR87_RS17175 0.16 +0.1
198,612 + ABZR87_RS17175 0.16 -1.4
198,612 + ABZR87_RS17175 0.16 -1.6
198,612 + ABZR87_RS17175 0.16 +1.0
198,613 - ABZR87_RS17175 0.16 -0.7
198,613 - ABZR87_RS17175 0.16 +1.0
198,613 - ABZR87_RS17175 0.16 -0.8
198,708 + ABZR87_RS17175 0.23 -3.0
198,708 + ABZR87_RS17175 0.23 +0.9
198,708 + ABZR87_RS17175 0.23 +0.4
198,709 - ABZR87_RS17175 0.23 -0.2
198,709 - ABZR87_RS17175 0.23 +0.4
198,798 + ABZR87_RS17175 0.30 -1.4
198,798 + ABZR87_RS17175 0.30 -0.1
198,798 + ABZR87_RS17175 0.30 -0.9
199,024 - ABZR87_RS17175 0.46 +0.0
199,084 + ABZR87_RS17175 0.50 -1.0
199,085 - ABZR87_RS17175 0.50 +1.1
199,085 - ABZR87_RS17175 0.50 -0.6
199,120 - ABZR87_RS17175 0.53 +0.6
199,120 - ABZR87_RS17175 0.53 +0.9
199,215 + ABZR87_RS17175 0.60 -0.5
199,216 - ABZR87_RS17175 0.60 -1.0
199,228 - ABZR87_RS17175 0.61 -1.2
199,228 - ABZR87_RS17175 0.61 +0.5
199,320 + ABZR87_RS17175 0.67 -1.6
199,321 - ABZR87_RS17175 0.67 +0.0
199,366 + ABZR87_RS17175 0.70 +0.5
199,367 - ABZR87_RS17175 0.71 +0.8

Or see this region's nucleotide sequence