Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16775

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16770 and ABZR87_RS16775 are separated by 65 nucleotidesABZR87_RS16775 and ABZR87_RS16780 are separated by 885 nucleotides ABZR87_RS16770: ABZR87_RS16770 - HD domain-containing phosphohydrolase, at 113,367 to 116,309 _RS16770 ABZR87_RS16775: ABZR87_RS16775 - chloride channel protein, at 116,375 to 117,685 _RS16775 ABZR87_RS16780: ABZR87_RS16780 - YadA-like family protein, at 118,571 to 123,865 _RS16780 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2 3at 115.420 kb on + strand, within ABZR87_RS16770at 115.614 kb on - strand, within ABZR87_RS16770at 115.799 kb on + strand, within ABZR87_RS16770at 115.799 kb on + strand, within ABZR87_RS16770at 115.800 kb on - strand, within ABZR87_RS16770at 115.800 kb on - strand, within ABZR87_RS16770at 115.815 kb on + strand, within ABZR87_RS16770at 115.815 kb on + strand, within ABZR87_RS16770at 115.816 kb on - strand, within ABZR87_RS16770at 115.816 kb on - strand, within ABZR87_RS16770at 116.096 kb on + strandat 116.097 kb on + strandat 116.097 kb on + strandat 116.097 kb on + strandat 116.098 kb on - strandat 116.098 kb on - strandat 116.098 kb on - strandat 116.162 kb on + strandat 116.163 kb on - strandat 116.205 kb on + strandat 116.205 kb on + strandat 116.205 kb on + strandat 116.206 kb on - strandat 116.206 kb on - strandat 116.206 kb on - strandat 116.206 kb on - strandat 116.206 kb on - strandat 116.206 kb on - strandat 116.206 kb on - strandat 116.268 kb on + strandat 116.268 kb on + strandat 116.269 kb on - strandat 116.269 kb on - strandat 116.323 kb on + strandat 116.337 kb on + strandat 116.337 kb on + strandat 116.337 kb on + strandat 116.337 kb on + strandat 116.338 kb on - strandat 116.338 kb on - strandat 116.338 kb on - strandat 116.338 kb on - strandat 116.339 kb on + strandat 116.340 kb on - strandat 116.438 kb on + strandat 116.438 kb on + strandat 116.438 kb on + strandat 116.438 kb on + strandat 116.439 kb on - strandat 116.489 kb on + strandat 116.489 kb on + strandat 116.489 kb on + strandat 116.490 kb on - strandat 116.505 kb on - strandat 116.798 kb on + strand, within ABZR87_RS16775at 116.798 kb on + strand, within ABZR87_RS16775at 116.798 kb on + strand, within ABZR87_RS16775at 116.798 kb on + strand, within ABZR87_RS16775at 116.798 kb on + strand, within ABZR87_RS16775at 116.798 kb on + strand, within ABZR87_RS16775at 116.799 kb on - strand, within ABZR87_RS16775at 116.799 kb on - strand, within ABZR87_RS16775at 116.799 kb on - strand, within ABZR87_RS16775at 116.799 kb on - strand, within ABZR87_RS16775at 116.799 kb on - strand, within ABZR87_RS16775at 116.799 kb on - strand, within ABZR87_RS16775at 116.799 kb on - strand, within ABZR87_RS16775at 116.799 kb on - strand, within ABZR87_RS16775at 116.799 kb on - strand, within ABZR87_RS16775at 116.799 kb on - strand, within ABZR87_RS16775at 116.893 kb on + strand, within ABZR87_RS16775at 116.893 kb on + strand, within ABZR87_RS16775at 116.893 kb on + strand, within ABZR87_RS16775at 116.980 kb on + strand, within ABZR87_RS16775at 116.980 kb on + strand, within ABZR87_RS16775at 116.980 kb on + strand, within ABZR87_RS16775at 116.980 kb on + strand, within ABZR87_RS16775at 116.981 kb on - strand, within ABZR87_RS16775at 117.020 kb on + strand, within ABZR87_RS16775at 117.020 kb on + strand, within ABZR87_RS16775at 117.020 kb on + strand, within ABZR87_RS16775at 117.020 kb on + strand, within ABZR87_RS16775at 117.020 kb on + strand, within ABZR87_RS16775at 117.020 kb on + strand, within ABZR87_RS16775at 117.020 kb on + strand, within ABZR87_RS16775at 117.020 kb on + strand, within ABZR87_RS16775at 117.021 kb on - strand, within ABZR87_RS16775at 117.021 kb on - strand, within ABZR87_RS16775at 117.021 kb on - strand, within ABZR87_RS16775at 117.021 kb on - strand, within ABZR87_RS16775at 117.021 kb on - strand, within ABZR87_RS16775at 117.021 kb on - strand, within ABZR87_RS16775at 117.026 kb on + strand, within ABZR87_RS16775at 117.026 kb on + strand, within ABZR87_RS16775at 117.026 kb on + strand, within ABZR87_RS16775at 117.027 kb on - strand, within ABZR87_RS16775at 117.027 kb on - strand, within ABZR87_RS16775at 117.144 kb on + strand, within ABZR87_RS16775at 117.144 kb on + strand, within ABZR87_RS16775at 117.145 kb on - strand, within ABZR87_RS16775at 117.145 kb on - strand, within ABZR87_RS16775at 117.145 kb on - strand, within ABZR87_RS16775at 117.145 kb on - strand, within ABZR87_RS16775at 117.323 kb on + strand, within ABZR87_RS16775at 117.323 kb on + strand, within ABZR87_RS16775at 117.323 kb on + strand, within ABZR87_RS16775at 117.323 kb on + strand, within ABZR87_RS16775at 117.323 kb on + strand, within ABZR87_RS16775at 117.323 kb on + strand, within ABZR87_RS16775at 117.324 kb on - strand, within ABZR87_RS16775at 117.324 kb on - strand, within ABZR87_RS16775at 117.324 kb on - strand, within ABZR87_RS16775at 117.324 kb on - strand, within ABZR87_RS16775at 117.324 kb on - strand, within ABZR87_RS16775at 117.359 kb on + strand, within ABZR87_RS16775at 117.359 kb on + strand, within ABZR87_RS16775at 117.359 kb on + strand, within ABZR87_RS16775at 117.360 kb on - strand, within ABZR87_RS16775at 117.360 kb on - strand, within ABZR87_RS16775at 117.360 kb on - strand, within ABZR87_RS16775at 117.360 kb on - strand, within ABZR87_RS16775at 117.399 kb on + strand, within ABZR87_RS16775at 117.488 kb on + strand, within ABZR87_RS16775at 117.489 kb on - strand, within ABZR87_RS16775at 117.489 kb on - strand, within ABZR87_RS16775at 117.489 kb on - strand, within ABZR87_RS16775at 117.521 kb on + strand, within ABZR87_RS16775at 117.629 kb on + strandat 117.629 kb on + strandat 117.630 kb on - strandat 117.630 kb on - strandat 117.779 kb on - strandat 117.841 kb on + strandat 117.841 kb on + strandat 117.842 kb on - strandat 117.842 kb on - strandat 117.844 kb on + strandat 117.845 kb on - strandat 117.845 kb on - strandat 117.868 kb on - strandat 117.955 kb on + strandat 117.955 kb on + strandat 117.955 kb on + strandat 117.955 kb on + strandat 117.956 kb on - strandat 117.956 kb on - strandat 117.956 kb on - strandat 117.975 kb on - strandat 117.998 kb on + strandat 118.047 kb on - strandat 118.047 kb on - strandat 118.122 kb on + strandat 118.137 kb on + strandat 118.137 kb on + strandat 118.137 kb on + strandat 118.137 kb on + strandat 118.138 kb on - strandat 118.146 kb on + strandat 118.147 kb on - strandat 118.147 kb on - strandat 118.151 kb on + strandat 118.151 kb on + strandat 118.151 kb on + strandat 118.151 kb on + strandat 118.151 kb on + strandat 118.152 kb on - strandat 118.152 kb on - strandat 118.155 kb on + strandat 118.155 kb on + strandat 118.155 kb on + strandat 118.155 kb on + strandat 118.155 kb on + strandat 118.155 kb on + strandat 118.155 kb on + strandat 118.155 kb on + strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.156 kb on - strandat 118.161 kb on + strandat 118.161 kb on + strandat 118.161 kb on + strandat 118.161 kb on + strandat 118.162 kb on - strandat 118.162 kb on - strandat 118.162 kb on - strandat 118.162 kb on - strandat 118.171 kb on + strandat 118.171 kb on + strandat 118.171 kb on + strandat 118.171 kb on + strandat 118.171 kb on + strandat 118.171 kb on + strandat 118.171 kb on + strandat 118.172 kb on - strandat 118.172 kb on - strandat 118.200 kb on + strandat 118.200 kb on + strandat 118.200 kb on + strandat 118.200 kb on + strandat 118.200 kb on + strandat 118.201 kb on - strandat 118.201 kb on - strandat 118.201 kb on - strandat 118.201 kb on - strandat 118.201 kb on - strandat 118.201 kb on - strandat 118.357 kb on + strandat 118.358 kb on - strandat 118.358 kb on - strandat 118.583 kb on + strandat 118.661 kb on - strandat 118.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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115,420 + ABZR87_RS16770 0.70 +0.5
115,614 - ABZR87_RS16770 0.76 +0.9
115,799 + ABZR87_RS16770 0.83 -0.0
115,799 + ABZR87_RS16770 0.83 -0.1
115,800 - ABZR87_RS16770 0.83 +0.7
115,800 - ABZR87_RS16770 0.83 +0.5
115,815 + ABZR87_RS16770 0.83 +0.4
115,815 + ABZR87_RS16770 0.83 -0.6
115,816 - ABZR87_RS16770 0.83 +0.7
115,816 - ABZR87_RS16770 0.83 +1.3
116,096 + -0.9
116,097 + -0.1
116,097 + -1.0
116,097 + +0.5
116,098 - -1.4
116,098 - +0.6
116,098 - +0.2
116,162 + +1.2
116,163 - +0.4
116,205 + -1.0
116,205 + +1.5
116,205 + +0.4
116,206 - +1.8
116,206 - -0.4
116,206 - +0.9
116,206 - -2.3
116,206 - -0.4
116,206 - +0.7
116,206 - +1.1
116,268 + +0.6
116,268 + +0.1
116,269 - -0.1
116,269 - +0.1
116,323 + +0.2
116,337 + -0.7
116,337 + -0.5
116,337 + +0.6
116,337 + -1.3
116,338 - +0.1
116,338 - -0.5
116,338 - +0.4
116,338 - -0.8
116,339 + -2.6
116,340 - -0.1
116,438 + -0.3
116,438 + +0.1
116,438 + -1.4
116,438 + +1.2
116,439 - -0.4
116,489 + +0.5
116,489 + -0.1
116,489 + +0.6
116,490 - +0.3
116,505 - -0.5
116,798 + ABZR87_RS16775 0.32 -0.1
116,798 + ABZR87_RS16775 0.32 -0.3
116,798 + ABZR87_RS16775 0.32 -0.4
116,798 + ABZR87_RS16775 0.32 +0.3
116,798 + ABZR87_RS16775 0.32 +0.6
116,798 + ABZR87_RS16775 0.32 +0.1
116,799 - ABZR87_RS16775 0.32 +0.3
116,799 - ABZR87_RS16775 0.32 +0.4
116,799 - ABZR87_RS16775 0.32 -0.5
116,799 - ABZR87_RS16775 0.32 +0.2
116,799 - ABZR87_RS16775 0.32 +0.5
116,799 - ABZR87_RS16775 0.32 -2.4
116,799 - ABZR87_RS16775 0.32 +0.5
116,799 - ABZR87_RS16775 0.32 -0.5
116,799 - ABZR87_RS16775 0.32 -0.3
116,799 - ABZR87_RS16775 0.32 -1.2
116,893 + ABZR87_RS16775 0.40 +0.7
116,893 + ABZR87_RS16775 0.40 -0.1
116,893 + ABZR87_RS16775 0.40 -0.0
116,980 + ABZR87_RS16775 0.46 -0.2
116,980 + ABZR87_RS16775 0.46 -0.2
116,980 + ABZR87_RS16775 0.46 -0.2
116,980 + ABZR87_RS16775 0.46 -0.3
116,981 - ABZR87_RS16775 0.46 +0.1
117,020 + ABZR87_RS16775 0.49 +0.8
117,020 + ABZR87_RS16775 0.49 -0.3
117,020 + ABZR87_RS16775 0.49 +0.6
117,020 + ABZR87_RS16775 0.49 -2.2
117,020 + ABZR87_RS16775 0.49 +0.1
117,020 + ABZR87_RS16775 0.49 -0.1
117,020 + ABZR87_RS16775 0.49 -0.0
117,020 + ABZR87_RS16775 0.49 +1.1
117,021 - ABZR87_RS16775 0.49 +1.1
117,021 - ABZR87_RS16775 0.49 +0.5
117,021 - ABZR87_RS16775 0.49 -0.2
117,021 - ABZR87_RS16775 0.49 +0.4
117,021 - ABZR87_RS16775 0.49 +0.4
117,021 - ABZR87_RS16775 0.49 +1.1
117,026 + ABZR87_RS16775 0.50 +1.6
117,026 + ABZR87_RS16775 0.50 -0.1
117,026 + ABZR87_RS16775 0.50 -0.8
117,027 - ABZR87_RS16775 0.50 +0.4
117,027 - ABZR87_RS16775 0.50 +0.6
117,144 + ABZR87_RS16775 0.59 -1.1
117,144 + ABZR87_RS16775 0.59 -0.2
117,145 - ABZR87_RS16775 0.59 +0.2
117,145 - ABZR87_RS16775 0.59 -0.7
117,145 - ABZR87_RS16775 0.59 -1.7
117,145 - ABZR87_RS16775 0.59 +0.4
117,323 + ABZR87_RS16775 0.72 -0.4
117,323 + ABZR87_RS16775 0.72 +1.3
117,323 + ABZR87_RS16775 0.72 +1.9
117,323 + ABZR87_RS16775 0.72 +0.3
117,323 + ABZR87_RS16775 0.72 -0.3
117,323 + ABZR87_RS16775 0.72 -0.6
117,324 - ABZR87_RS16775 0.72 -2.3
117,324 - ABZR87_RS16775 0.72 +0.3
117,324 - ABZR87_RS16775 0.72 -0.3
117,324 - ABZR87_RS16775 0.72 -0.4
117,324 - ABZR87_RS16775 0.72 +0.1
117,359 + ABZR87_RS16775 0.75 -0.4
117,359 + ABZR87_RS16775 0.75 +0.0
117,359 + ABZR87_RS16775 0.75 +0.4
117,360 - ABZR87_RS16775 0.75 +0.9
117,360 - ABZR87_RS16775 0.75 -1.0
117,360 - ABZR87_RS16775 0.75 +0.8
117,360 - ABZR87_RS16775 0.75 -0.5
117,399 + ABZR87_RS16775 0.78 -0.9
117,488 + ABZR87_RS16775 0.85 +0.4
117,489 - ABZR87_RS16775 0.85 +0.1
117,489 - ABZR87_RS16775 0.85 -0.6
117,489 - ABZR87_RS16775 0.85 -0.5
117,521 + ABZR87_RS16775 0.87 -1.5
117,629 + -0.8
117,629 + -0.7
117,630 - +1.1
117,630 - +0.1
117,779 - +0.4
117,841 + -0.2
117,841 + -0.6
117,842 - -0.2
117,842 - +0.2
117,844 + +2.1
117,845 - +1.8
117,845 - -0.0
117,868 - -0.4
117,955 + +0.1
117,955 + -0.4
117,955 + -1.7
117,955 + +0.1
117,956 - +1.3
117,956 - -0.1
117,956 - -0.4
117,975 - +1.8
117,998 + +0.0
118,047 - +0.3
118,047 - -0.8
118,122 + -1.6
118,137 + -0.8
118,137 + +0.1
118,137 + -0.8
118,137 + -0.3
118,138 - -0.8
118,146 + +0.5
118,147 - +0.1
118,147 - -0.4
118,151 + -0.7
118,151 + +0.3
118,151 + -0.5
118,151 + +1.4
118,151 + +1.1
118,152 - -0.0
118,152 - -1.4
118,155 + -1.8
118,155 + +0.7
118,155 + -0.7
118,155 + -0.5
118,155 + -0.3
118,155 + -0.5
118,155 + -0.0
118,155 + +1.1
118,156 - +0.1
118,156 - +1.0
118,156 - -0.8
118,156 - +0.1
118,156 - +0.1
118,156 - +1.3
118,156 - +0.3
118,156 - +0.1
118,156 - -0.2
118,156 - +0.5
118,156 - +0.4
118,156 - +3.1
118,156 - -0.6
118,156 - -0.3
118,156 - +0.8
118,156 - +0.1
118,161 + +0.1
118,161 + -1.8
118,161 + -0.3
118,161 + -0.3
118,162 - +0.5
118,162 - -0.2
118,162 - -0.8
118,162 - +0.9
118,171 + -0.1
118,171 + -0.2
118,171 + -0.3
118,171 + -2.3
118,171 + -0.4
118,171 + -1.5
118,171 + -0.3
118,172 - -0.3
118,172 - -0.8
118,200 + -1.1
118,200 + -0.4
118,200 + -0.1
118,200 + -0.4
118,200 + +1.1
118,201 - -0.0
118,201 - +1.1
118,201 - -0.1
118,201 - -0.2
118,201 - +0.7
118,201 - -0.7
118,357 + +0.8
118,358 - +1.9
118,358 - +0.6
118,583 + +0.3
118,661 - -0.5
118,661 - -0.1

Or see this region's nucleotide sequence