Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10340 and ABZR87_RS10345 are separated by 136 nucleotides ABZR87_RS10345 and ABZR87_RS10350 overlap by 8 nucleotides ABZR87_RS10350 and ABZR87_RS10355 are separated by 98 nucleotides
ABZR87_RS10340: ABZR87_RS10340 - LysR family transcriptional regulator, at 2,192,906 to 2,193,820
_RS10340
ABZR87_RS10345: ABZR87_RS10345 - 3-isopropylmalate dehydratase large subunit, at 2,193,957 to 2,195,378
_RS10345
ABZR87_RS10350: ABZR87_RS10350 - 3-isopropylmalate dehydratase small subunit, at 2,195,371 to 2,196,033
_RS10350
ABZR87_RS10355: ABZR87_RS10355 - 2-hydroxycarboxylate transporter family protein, at 2,196,132 to 2,197,454
_RS10355
Position (kb)
2193
2194
2195
2196 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2193.006 kb on + strand, within ABZR87_RS10340 at 2193.007 kb on - strand, within ABZR87_RS10340 at 2193.214 kb on - strand, within ABZR87_RS10340 at 2193.309 kb on + strand, within ABZR87_RS10340 at 2193.822 kb on - strand at 2193.842 kb on - strand at 2193.883 kb on + strand at 2193.883 kb on + strand at 2193.883 kb on + strand at 2193.883 kb on + strand at 2193.884 kb on - strand at 2193.884 kb on - strand at 2193.884 kb on - strand at 2193.884 kb on - strand at 2193.884 kb on - strand at 2193.884 kb on - strand at 2193.884 kb on - strand at 2193.972 kb on + strand at 2193.972 kb on + strand at 2193.973 kb on - strand at 2193.973 kb on - strand at 2194.032 kb on + strand at 2194.032 kb on + strand at 2194.032 kb on + strand at 2194.032 kb on + strand at 2194.059 kb on + strand at 2194.059 kb on + strand at 2194.060 kb on - strand at 2194.359 kb on + strand, within ABZR87_RS10345 at 2194.468 kb on + strand, within ABZR87_RS10345 at 2194.469 kb on - strand, within ABZR87_RS10345 at 2194.469 kb on - strand, within ABZR87_RS10345 at 2194.469 kb on - strand, within ABZR87_RS10345 at 2194.469 kb on - strand, within ABZR87_RS10345 at 2194.469 kb on - strand, within ABZR87_RS10345 at 2194.469 kb on - strand, within ABZR87_RS10345 at 2194.469 kb on - strand, within ABZR87_RS10345 at 2194.683 kb on + strand, within ABZR87_RS10345 at 2194.683 kb on + strand, within ABZR87_RS10345 at 2194.684 kb on - strand, within ABZR87_RS10345 at 2194.716 kb on - strand, within ABZR87_RS10345 at 2194.716 kb on - strand, within ABZR87_RS10345 at 2194.716 kb on - strand, within ABZR87_RS10345 at 2194.716 kb on - strand, within ABZR87_RS10345 at 2194.723 kb on + strand, within ABZR87_RS10345 at 2194.723 kb on + strand, within ABZR87_RS10345 at 2194.723 kb on + strand, within ABZR87_RS10345 at 2194.723 kb on + strand, within ABZR87_RS10345 at 2194.723 kb on + strand, within ABZR87_RS10345 at 2194.724 kb on - strand, within ABZR87_RS10345 at 2194.724 kb on - strand, within ABZR87_RS10345 at 2194.818 kb on + strand, within ABZR87_RS10345 at 2194.818 kb on + strand, within ABZR87_RS10345 at 2194.819 kb on - strand, within ABZR87_RS10345 at 2194.918 kb on - strand, within ABZR87_RS10345 at 2194.919 kb on + strand, within ABZR87_RS10345 at 2194.920 kb on - strand, within ABZR87_RS10345 at 2195.310 kb on - strand at 2195.392 kb on + strand at 2195.501 kb on - strand, within ABZR87_RS10350 at 2195.564 kb on - strand, within ABZR87_RS10350 at 2195.564 kb on - strand, within ABZR87_RS10350 at 2195.830 kb on - strand, within ABZR87_RS10350 at 2196.195 kb on + strand at 2196.226 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,193,006 + ABZR87_RS10340 0.11 -0.8 2,193,007 - ABZR87_RS10340 0.11 +0.3 2,193,214 - ABZR87_RS10340 0.34 +0.5 2,193,309 + ABZR87_RS10340 0.44 +0.8 2,193,822 - -0.5 2,193,842 - -1.4 2,193,883 + -0.5 2,193,883 + +0.7 2,193,883 + +0.2 2,193,883 + -0.2 2,193,884 - +0.1 2,193,884 - -0.0 2,193,884 - -0.6 2,193,884 - -0.3 2,193,884 - +0.6 2,193,884 - -0.3 2,193,884 - +0.1 2,193,972 + +0.1 2,193,972 + -1.6 2,193,973 - -0.1 2,193,973 - +1.0 2,194,032 + +0.1 2,194,032 + -1.5 2,194,032 + +0.1 2,194,032 + +1.1 2,194,059 + +0.4 2,194,059 + -0.2 2,194,060 - +0.5 2,194,359 + ABZR87_RS10345 0.28 -0.2 2,194,468 + ABZR87_RS10345 0.36 +0.5 2,194,469 - ABZR87_RS10345 0.36 +0.3 2,194,469 - ABZR87_RS10345 0.36 -3.1 2,194,469 - ABZR87_RS10345 0.36 +0.4 2,194,469 - ABZR87_RS10345 0.36 +0.6 2,194,469 - ABZR87_RS10345 0.36 -0.3 2,194,469 - ABZR87_RS10345 0.36 -1.1 2,194,469 - ABZR87_RS10345 0.36 +0.9 2,194,683 + ABZR87_RS10345 0.51 +1.1 2,194,683 + ABZR87_RS10345 0.51 +0.1 2,194,684 - ABZR87_RS10345 0.51 +1.2 2,194,716 - ABZR87_RS10345 0.53 -0.5 2,194,716 - ABZR87_RS10345 0.53 -0.4 2,194,716 - ABZR87_RS10345 0.53 +1.3 2,194,716 - ABZR87_RS10345 0.53 +0.6 2,194,723 + ABZR87_RS10345 0.54 -0.0 2,194,723 + ABZR87_RS10345 0.54 +0.7 2,194,723 + ABZR87_RS10345 0.54 +0.6 2,194,723 + ABZR87_RS10345 0.54 +0.9 2,194,723 + ABZR87_RS10345 0.54 -0.0 2,194,724 - ABZR87_RS10345 0.54 +0.9 2,194,724 - ABZR87_RS10345 0.54 +0.2 2,194,818 + ABZR87_RS10345 0.61 -0.4 2,194,818 + ABZR87_RS10345 0.61 +0.2 2,194,819 - ABZR87_RS10345 0.61 +0.1 2,194,918 - ABZR87_RS10345 0.68 +0.8 2,194,919 + ABZR87_RS10345 0.68 -0.7 2,194,920 - ABZR87_RS10345 0.68 +1.0 2,195,310 - +0.4 2,195,392 + +1.1 2,195,501 - ABZR87_RS10350 0.20 +0.1 2,195,564 - ABZR87_RS10350 0.29 -1.5 2,195,564 - ABZR87_RS10350 0.29 +0.5 2,195,830 - ABZR87_RS10350 0.69 +0.2 2,196,195 + -0.2 2,196,226 - +0.8
Or see this region's nucleotide sequence