Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09935 and ABZR87_RS09940 are separated by 337 nucleotides ABZR87_RS09940 and ABZR87_RS09945 are separated by 159 nucleotides
ABZR87_RS09935: ABZR87_RS09935 - amino acid aminotransferase, at 2,109,200 to 2,110,396
_RS09935
ABZR87_RS09940: ABZR87_RS09940 - excinuclease ABC subunit UvrB, at 2,110,734 to 2,112,824
_RS09940
ABZR87_RS09945: ABZR87_RS09945 - recombinase, at 2,112,984 to 2,115,068
_RS09945
Position (kb)
2110
2111
2112
2113 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2109.885 kb on + strand, within ABZR87_RS09935 at 2109.886 kb on - strand, within ABZR87_RS09935 at 2109.942 kb on + strand, within ABZR87_RS09935 at 2109.942 kb on + strand, within ABZR87_RS09935 at 2109.943 kb on - strand, within ABZR87_RS09935 at 2109.945 kb on + strand, within ABZR87_RS09935 at 2109.945 kb on + strand, within ABZR87_RS09935 at 2109.951 kb on + strand, within ABZR87_RS09935 at 2109.951 kb on + strand, within ABZR87_RS09935 at 2109.951 kb on + strand, within ABZR87_RS09935 at 2109.951 kb on + strand, within ABZR87_RS09935 at 2109.951 kb on + strand, within ABZR87_RS09935 at 2109.951 kb on + strand, within ABZR87_RS09935 at 2109.952 kb on - strand, within ABZR87_RS09935 at 2109.952 kb on - strand, within ABZR87_RS09935 at 2109.952 kb on - strand, within ABZR87_RS09935 at 2109.952 kb on - strand, within ABZR87_RS09935 at 2109.952 kb on - strand, within ABZR87_RS09935 at 2110.198 kb on - strand, within ABZR87_RS09935 at 2110.284 kb on + strand at 2110.284 kb on + strand at 2110.284 kb on + strand at 2110.285 kb on - strand at 2110.486 kb on + strand at 2110.486 kb on + strand at 2110.486 kb on + strand at 2110.487 kb on - strand at 2110.487 kb on - strand at 2110.522 kb on + strand at 2110.522 kb on + strand at 2110.531 kb on + strand at 2110.565 kb on + strand at 2110.565 kb on + strand at 2110.565 kb on + strand at 2110.565 kb on + strand at 2110.566 kb on - strand at 2110.566 kb on - strand at 2110.585 kb on + strand at 2110.634 kb on + strand at 2110.635 kb on - strand at 2110.635 kb on - strand at 2110.635 kb on - strand at 2110.639 kb on + strand at 2110.640 kb on - strand at 2110.812 kb on + strand at 2110.813 kb on - strand at 2110.813 kb on - strand at 2110.822 kb on - strand at 2111.010 kb on + strand, within ABZR87_RS09940 at 2111.052 kb on + strand, within ABZR87_RS09940 at 2111.053 kb on - strand, within ABZR87_RS09940 at 2111.064 kb on + strand, within ABZR87_RS09940 at 2111.067 kb on + strand, within ABZR87_RS09940 at 2111.068 kb on - strand, within ABZR87_RS09940 at 2111.069 kb on - strand, within ABZR87_RS09940 at 2111.073 kb on + strand, within ABZR87_RS09940 at 2111.073 kb on + strand, within ABZR87_RS09940 at 2111.073 kb on + strand, within ABZR87_RS09940 at 2111.073 kb on + strand, within ABZR87_RS09940 at 2111.073 kb on + strand, within ABZR87_RS09940 at 2111.074 kb on - strand, within ABZR87_RS09940 at 2111.074 kb on - strand, within ABZR87_RS09940 at 2111.076 kb on + strand, within ABZR87_RS09940 at 2111.076 kb on + strand, within ABZR87_RS09940 at 2111.077 kb on - strand, within ABZR87_RS09940 at 2111.077 kb on - strand, within ABZR87_RS09940 at 2111.077 kb on - strand, within ABZR87_RS09940 at 2111.091 kb on + strand, within ABZR87_RS09940 at 2111.091 kb on + strand, within ABZR87_RS09940 at 2111.091 kb on + strand, within ABZR87_RS09940 at 2111.091 kb on + strand, within ABZR87_RS09940 at 2111.091 kb on + strand, within ABZR87_RS09940 at 2111.092 kb on - strand, within ABZR87_RS09940 at 2111.092 kb on - strand, within ABZR87_RS09940 at 2111.092 kb on - strand, within ABZR87_RS09940 at 2111.092 kb on - strand, within ABZR87_RS09940 at 2111.092 kb on - strand, within ABZR87_RS09940 at 2111.226 kb on + strand, within ABZR87_RS09940 at 2111.226 kb on + strand, within ABZR87_RS09940 at 2111.226 kb on + strand, within ABZR87_RS09940 at 2111.226 kb on + strand, within ABZR87_RS09940 at 2111.226 kb on + strand, within ABZR87_RS09940 at 2111.226 kb on + strand, within ABZR87_RS09940 at 2111.226 kb on + strand, within ABZR87_RS09940 at 2111.226 kb on + strand, within ABZR87_RS09940 at 2111.227 kb on - strand, within ABZR87_RS09940 at 2111.227 kb on - strand, within ABZR87_RS09940 at 2111.227 kb on - strand, within ABZR87_RS09940 at 2111.227 kb on - strand, within ABZR87_RS09940 at 2111.227 kb on - strand, within ABZR87_RS09940 at 2111.250 kb on + strand, within ABZR87_RS09940 at 2111.250 kb on + strand, within ABZR87_RS09940 at 2111.331 kb on + strand, within ABZR87_RS09940 at 2111.331 kb on + strand, within ABZR87_RS09940 at 2111.332 kb on - strand, within ABZR87_RS09940 at 2111.332 kb on - strand, within ABZR87_RS09940 at 2111.520 kb on + strand, within ABZR87_RS09940 at 2111.535 kb on + strand, within ABZR87_RS09940 at 2111.535 kb on + strand, within ABZR87_RS09940 at 2111.536 kb on - strand, within ABZR87_RS09940 at 2111.536 kb on - strand, within ABZR87_RS09940 at 2111.613 kb on + strand, within ABZR87_RS09940 at 2111.772 kb on + strand, within ABZR87_RS09940 at 2111.841 kb on + strand, within ABZR87_RS09940 at 2111.841 kb on + strand, within ABZR87_RS09940 at 2111.841 kb on + strand, within ABZR87_RS09940 at 2111.842 kb on - strand, within ABZR87_RS09940 at 2111.880 kb on + strand, within ABZR87_RS09940 at 2112.265 kb on + strand, within ABZR87_RS09940 at 2112.265 kb on + strand, within ABZR87_RS09940 at 2112.266 kb on - strand, within ABZR87_RS09940 at 2112.266 kb on - strand, within ABZR87_RS09940 at 2112.334 kb on + strand, within ABZR87_RS09940 at 2112.334 kb on + strand, within ABZR87_RS09940 at 2112.447 kb on + strand, within ABZR87_RS09940 at 2112.448 kb on - strand, within ABZR87_RS09940 at 2112.448 kb on - strand, within ABZR87_RS09940 at 2112.591 kb on + strand, within ABZR87_RS09940 at 2112.591 kb on + strand, within ABZR87_RS09940 at 2112.591 kb on + strand, within ABZR87_RS09940 at 2112.591 kb on + strand, within ABZR87_RS09940 at 2112.592 kb on - strand, within ABZR87_RS09940 at 2112.645 kb on + strand at 2113.001 kb on + strand at 2113.122 kb on + strand at 2113.191 kb on + strand at 2113.205 kb on - strand, within ABZR87_RS09945 at 2113.205 kb on - strand, within ABZR87_RS09945 at 2113.473 kb on + strand, within ABZR87_RS09945 at 2113.473 kb on + strand, within ABZR87_RS09945 at 2113.647 kb on + strand, within ABZR87_RS09945 at 2113.647 kb on + strand, within ABZR87_RS09945 at 2113.648 kb on - strand, within ABZR87_RS09945 at 2113.648 kb on - strand, within ABZR87_RS09945 at 2113.738 kb on - strand, within ABZR87_RS09945 at 2113.786 kb on - strand, within ABZR87_RS09945
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,109,885 + ABZR87_RS09935 0.57 -2.6 2,109,886 - ABZR87_RS09935 0.57 -1.5 2,109,942 + ABZR87_RS09935 0.62 -2.6 2,109,942 + ABZR87_RS09935 0.62 -3.6 2,109,943 - ABZR87_RS09935 0.62 +0.9 2,109,945 + ABZR87_RS09935 0.62 -0.1 2,109,945 + ABZR87_RS09935 0.62 -1.1 2,109,951 + ABZR87_RS09935 0.63 -2.7 2,109,951 + ABZR87_RS09935 0.63 -0.7 2,109,951 + ABZR87_RS09935 0.63 -2.8 2,109,951 + ABZR87_RS09935 0.63 -2.7 2,109,951 + ABZR87_RS09935 0.63 -3.0 2,109,951 + ABZR87_RS09935 0.63 -3.1 2,109,952 - ABZR87_RS09935 0.63 -1.5 2,109,952 - ABZR87_RS09935 0.63 -1.7 2,109,952 - ABZR87_RS09935 0.63 -3.2 2,109,952 - ABZR87_RS09935 0.63 -1.9 2,109,952 - ABZR87_RS09935 0.63 -2.8 2,110,198 - ABZR87_RS09935 0.83 -1.3 2,110,284 + -2.3 2,110,284 + -3.6 2,110,284 + -3.3 2,110,285 - -0.7 2,110,486 + -2.5 2,110,486 + -1.5 2,110,486 + -3.1 2,110,487 - -0.1 2,110,487 - -0.4 2,110,522 + +0.4 2,110,522 + -0.1 2,110,531 + -1.1 2,110,565 + -0.8 2,110,565 + +0.6 2,110,565 + -0.6 2,110,565 + -0.9 2,110,566 - +1.1 2,110,566 - -0.4 2,110,585 + -1.1 2,110,634 + +0.4 2,110,635 - -1.6 2,110,635 - +0.1 2,110,635 - -0.1 2,110,639 + +0.1 2,110,640 - -1.5 2,110,812 + -0.1 2,110,813 - -0.9 2,110,813 - +0.1 2,110,822 - -0.2 2,111,010 + ABZR87_RS09940 0.13 -0.4 2,111,052 + ABZR87_RS09940 0.15 -2.0 2,111,053 - ABZR87_RS09940 0.15 -0.5 2,111,064 + ABZR87_RS09940 0.16 +0.9 2,111,067 + ABZR87_RS09940 0.16 -0.6 2,111,068 - ABZR87_RS09940 0.16 -0.8 2,111,069 - ABZR87_RS09940 0.16 -0.5 2,111,073 + ABZR87_RS09940 0.16 +0.8 2,111,073 + ABZR87_RS09940 0.16 +0.1 2,111,073 + ABZR87_RS09940 0.16 -0.6 2,111,073 + ABZR87_RS09940 0.16 -1.3 2,111,073 + ABZR87_RS09940 0.16 +0.9 2,111,074 - ABZR87_RS09940 0.16 +1.1 2,111,074 - ABZR87_RS09940 0.16 -0.5 2,111,076 + ABZR87_RS09940 0.16 +0.6 2,111,076 + ABZR87_RS09940 0.16 +0.1 2,111,077 - ABZR87_RS09940 0.16 +0.5 2,111,077 - ABZR87_RS09940 0.16 +0.3 2,111,077 - ABZR87_RS09940 0.16 -0.9 2,111,091 + ABZR87_RS09940 0.17 -0.1 2,111,091 + ABZR87_RS09940 0.17 -0.6 2,111,091 + ABZR87_RS09940 0.17 +1.9 2,111,091 + ABZR87_RS09940 0.17 -0.6 2,111,091 + ABZR87_RS09940 0.17 -1.9 2,111,092 - ABZR87_RS09940 0.17 +0.9 2,111,092 - ABZR87_RS09940 0.17 +0.5 2,111,092 - ABZR87_RS09940 0.17 -0.2 2,111,092 - ABZR87_RS09940 0.17 +1.4 2,111,092 - ABZR87_RS09940 0.17 -0.0 2,111,226 + ABZR87_RS09940 0.24 -1.5 2,111,226 + ABZR87_RS09940 0.24 -0.1 2,111,226 + ABZR87_RS09940 0.24 -1.2 2,111,226 + ABZR87_RS09940 0.24 +0.9 2,111,226 + ABZR87_RS09940 0.24 +0.9 2,111,226 + ABZR87_RS09940 0.24 -0.6 2,111,226 + ABZR87_RS09940 0.24 +0.9 2,111,226 + ABZR87_RS09940 0.24 -0.6 2,111,227 - ABZR87_RS09940 0.24 +0.2 2,111,227 - ABZR87_RS09940 0.24 +1.4 2,111,227 - ABZR87_RS09940 0.24 -0.5 2,111,227 - ABZR87_RS09940 0.24 -0.7 2,111,227 - ABZR87_RS09940 0.24 -1.6 2,111,250 + ABZR87_RS09940 0.25 -1.9 2,111,250 + ABZR87_RS09940 0.25 -1.4 2,111,331 + ABZR87_RS09940 0.29 +0.4 2,111,331 + ABZR87_RS09940 0.29 +1.2 2,111,332 - ABZR87_RS09940 0.29 -1.1 2,111,332 - ABZR87_RS09940 0.29 +0.2 2,111,520 + ABZR87_RS09940 0.38 -0.3 2,111,535 + ABZR87_RS09940 0.38 +0.2 2,111,535 + ABZR87_RS09940 0.38 -0.2 2,111,536 - ABZR87_RS09940 0.38 -0.7 2,111,536 - ABZR87_RS09940 0.38 -0.2 2,111,613 + ABZR87_RS09940 0.42 -0.7 2,111,772 + ABZR87_RS09940 0.50 -0.4 2,111,841 + ABZR87_RS09940 0.53 +1.1 2,111,841 + ABZR87_RS09940 0.53 -0.7 2,111,841 + ABZR87_RS09940 0.53 -0.1 2,111,842 - ABZR87_RS09940 0.53 -0.3 2,111,880 + ABZR87_RS09940 0.55 -2.6 2,112,265 + ABZR87_RS09940 0.73 -0.5 2,112,265 + ABZR87_RS09940 0.73 -0.8 2,112,266 - ABZR87_RS09940 0.73 -0.4 2,112,266 - ABZR87_RS09940 0.73 -1.8 2,112,334 + ABZR87_RS09940 0.77 -1.5 2,112,334 + ABZR87_RS09940 0.77 -0.8 2,112,447 + ABZR87_RS09940 0.82 -0.7 2,112,448 - ABZR87_RS09940 0.82 +0.3 2,112,448 - ABZR87_RS09940 0.82 -0.5 2,112,591 + ABZR87_RS09940 0.89 +0.4 2,112,591 + ABZR87_RS09940 0.89 -2.1 2,112,591 + ABZR87_RS09940 0.89 +0.0 2,112,591 + ABZR87_RS09940 0.89 -0.4 2,112,592 - ABZR87_RS09940 0.89 +1.1 2,112,645 + +0.9 2,113,001 + -0.0 2,113,122 + +0.4 2,113,191 + +0.4 2,113,205 - ABZR87_RS09945 0.11 +0.0 2,113,205 - ABZR87_RS09945 0.11 +0.4 2,113,473 + ABZR87_RS09945 0.23 +1.7 2,113,473 + ABZR87_RS09945 0.23 +0.6 2,113,647 + ABZR87_RS09945 0.32 +0.3 2,113,647 + ABZR87_RS09945 0.32 +0.1 2,113,648 - ABZR87_RS09945 0.32 +0.4 2,113,648 - ABZR87_RS09945 0.32 +1.1 2,113,738 - ABZR87_RS09945 0.36 +0.9 2,113,786 - ABZR87_RS09945 0.38 -0.1
Or see this region's nucleotide sequence