Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00490

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00480 and ABZR87_RS00485 are separated by 91 nucleotidesABZR87_RS00485 and ABZR87_RS00490 are separated by 38 nucleotidesABZR87_RS00490 and ABZR87_RS00495 overlap by 4 nucleotidesABZR87_RS00495 and ABZR87_RS00500 are separated by 35 nucleotides ABZR87_RS00480: ABZR87_RS00480 - cytochrome-c peroxidase, at 99,392 to 100,723 _RS00480 ABZR87_RS00485: ABZR87_RS00485 - DUF192 domain-containing protein, at 100,815 to 101,267 _RS00485 ABZR87_RS00490: ABZR87_RS00490 - MBL fold metallo-hydrolase, at 101,306 to 102,271 _RS00490 ABZR87_RS00495: ABZR87_RS00495 - MliC family protein, at 102,268 to 102,735 _RS00495 ABZR87_RS00500: ABZR87_RS00500 - LysR substrate-binding domain-containing protein, at 102,771 to 103,736 _RS00500 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1 2at 100.419 kb on - strand, within ABZR87_RS00480at 100.423 kb on + strand, within ABZR87_RS00480at 100.423 kb on + strand, within ABZR87_RS00480at 100.490 kb on + strand, within ABZR87_RS00480at 100.490 kb on + strand, within ABZR87_RS00480at 100.490 kb on + strand, within ABZR87_RS00480at 100.490 kb on + strand, within ABZR87_RS00480at 100.490 kb on + strand, within ABZR87_RS00480at 100.490 kb on + strand, within ABZR87_RS00480at 100.490 kb on + strand, within ABZR87_RS00480at 100.491 kb on - strand, within ABZR87_RS00480at 100.501 kb on + strand, within ABZR87_RS00480at 100.501 kb on + strand, within ABZR87_RS00480at 100.502 kb on - strand, within ABZR87_RS00480at 100.613 kb on + strandat 100.613 kb on + strandat 100.613 kb on + strandat 100.613 kb on + strandat 100.614 kb on - strandat 100.614 kb on - strandat 100.614 kb on - strandat 100.714 kb on + strandat 100.714 kb on + strandat 100.714 kb on + strandat 100.715 kb on - strandat 100.721 kb on + strandat 100.938 kb on + strand, within ABZR87_RS00485at 100.938 kb on + strand, within ABZR87_RS00485at 100.938 kb on + strand, within ABZR87_RS00485at 100.938 kb on + strand, within ABZR87_RS00485at 100.938 kb on + strand, within ABZR87_RS00485at 100.938 kb on + strand, within ABZR87_RS00485at 100.938 kb on + strand, within ABZR87_RS00485at 100.938 kb on + strand, within ABZR87_RS00485at 100.938 kb on + strand, within ABZR87_RS00485at 100.939 kb on - strand, within ABZR87_RS00485at 100.939 kb on - strand, within ABZR87_RS00485at 100.939 kb on - strand, within ABZR87_RS00485at 100.939 kb on - strand, within ABZR87_RS00485at 101.187 kb on + strand, within ABZR87_RS00485at 101.187 kb on + strand, within ABZR87_RS00485at 101.188 kb on - strand, within ABZR87_RS00485at 101.188 kb on - strand, within ABZR87_RS00485at 101.188 kb on - strand, within ABZR87_RS00485at 101.280 kb on + strandat 101.280 kb on + strandat 101.280 kb on + strandat 101.280 kb on + strandat 101.281 kb on - strandat 101.281 kb on - strandat 101.281 kb on - strandat 101.281 kb on - strandat 101.281 kb on - strandat 101.281 kb on - strandat 101.281 kb on - strandat 101.407 kb on - strand, within ABZR87_RS00490at 101.525 kb on + strand, within ABZR87_RS00490at 101.525 kb on + strand, within ABZR87_RS00490at 101.525 kb on + strand, within ABZR87_RS00490at 101.525 kb on + strand, within ABZR87_RS00490at 101.526 kb on - strand, within ABZR87_RS00490at 101.526 kb on - strand, within ABZR87_RS00490at 101.526 kb on - strand, within ABZR87_RS00490at 101.561 kb on + strand, within ABZR87_RS00490at 101.561 kb on + strand, within ABZR87_RS00490at 101.562 kb on - strand, within ABZR87_RS00490at 101.562 kb on - strand, within ABZR87_RS00490at 101.639 kb on + strand, within ABZR87_RS00490at 101.744 kb on + strand, within ABZR87_RS00490at 101.744 kb on + strand, within ABZR87_RS00490at 101.745 kb on - strand, within ABZR87_RS00490at 101.745 kb on - strand, within ABZR87_RS00490at 101.745 kb on - strand, within ABZR87_RS00490at 101.750 kb on + strand, within ABZR87_RS00490at 101.987 kb on + strand, within ABZR87_RS00490at 101.987 kb on + strand, within ABZR87_RS00490at 101.987 kb on + strand, within ABZR87_RS00490at 101.988 kb on - strand, within ABZR87_RS00490at 101.988 kb on - strand, within ABZR87_RS00490at 101.988 kb on - strand, within ABZR87_RS00490at 102.185 kb on + strandat 102.185 kb on + strandat 102.185 kb on + strandat 102.185 kb on + strandat 102.186 kb on - strandat 102.270 kb on - strandat 102.306 kb on - strandat 102.377 kb on + strand, within ABZR87_RS00495at 102.377 kb on + strand, within ABZR87_RS00495at 102.377 kb on + strand, within ABZR87_RS00495at 102.377 kb on + strand, within ABZR87_RS00495at 102.377 kb on + strand, within ABZR87_RS00495at 102.377 kb on + strand, within ABZR87_RS00495at 102.377 kb on + strand, within ABZR87_RS00495at 102.378 kb on - strand, within ABZR87_RS00495at 102.378 kb on - strand, within ABZR87_RS00495at 102.378 kb on - strand, within ABZR87_RS00495at 102.378 kb on - strand, within ABZR87_RS00495at 102.378 kb on - strand, within ABZR87_RS00495at 102.378 kb on - strand, within ABZR87_RS00495at 102.378 kb on - strand, within ABZR87_RS00495at 102.393 kb on - strand, within ABZR87_RS00495at 102.485 kb on + strand, within ABZR87_RS00495at 102.485 kb on + strand, within ABZR87_RS00495at 102.486 kb on - strand, within ABZR87_RS00495at 102.486 kb on - strand, within ABZR87_RS00495at 102.486 kb on - strand, within ABZR87_RS00495at 102.486 kb on - strand, within ABZR87_RS00495at 102.521 kb on + strand, within ABZR87_RS00495at 102.560 kb on + strand, within ABZR87_RS00495at 102.560 kb on + strand, within ABZR87_RS00495at 102.561 kb on - strand, within ABZR87_RS00495at 102.639 kb on + strand, within ABZR87_RS00495at 103.063 kb on + strand, within ABZR87_RS00500at 103.063 kb on + strand, within ABZR87_RS00500at 103.063 kb on + strand, within ABZR87_RS00500at 103.063 kb on + strand, within ABZR87_RS00500at 103.063 kb on + strand, within ABZR87_RS00500at 103.064 kb on - strand, within ABZR87_RS00500at 103.064 kb on - strand, within ABZR87_RS00500at 103.064 kb on - strand, within ABZR87_RS00500at 103.064 kb on - strand, within ABZR87_RS00500

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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100,419 - ABZR87_RS00480 0.77 -0.5
100,423 + ABZR87_RS00480 0.77 +0.1
100,423 + ABZR87_RS00480 0.77 +0.5
100,490 + ABZR87_RS00480 0.82 -1.1
100,490 + ABZR87_RS00480 0.82 -0.1
100,490 + ABZR87_RS00480 0.82 +0.8
100,490 + ABZR87_RS00480 0.82 +1.2
100,490 + ABZR87_RS00480 0.82 -1.4
100,490 + ABZR87_RS00480 0.82 -0.5
100,490 + ABZR87_RS00480 0.82 +0.4
100,491 - ABZR87_RS00480 0.83 -1.3
100,501 + ABZR87_RS00480 0.83 +1.7
100,501 + ABZR87_RS00480 0.83 +1.1
100,502 - ABZR87_RS00480 0.83 +1.0
100,613 + +0.3
100,613 + -0.3
100,613 + +0.6
100,613 + +0.0
100,614 - +0.1
100,614 - -2.1
100,614 - -0.5
100,714 + +0.2
100,714 + +0.5
100,714 + +0.1
100,715 - -0.1
100,721 + -0.2
100,938 + ABZR87_RS00485 0.27 -0.2
100,938 + ABZR87_RS00485 0.27 +0.0
100,938 + ABZR87_RS00485 0.27 +0.4
100,938 + ABZR87_RS00485 0.27 +0.1
100,938 + ABZR87_RS00485 0.27 -0.9
100,938 + ABZR87_RS00485 0.27 -0.4
100,938 + ABZR87_RS00485 0.27 +0.3
100,938 + ABZR87_RS00485 0.27 -0.1
100,938 + ABZR87_RS00485 0.27 +1.1
100,939 - ABZR87_RS00485 0.27 +0.8
100,939 - ABZR87_RS00485 0.27 -0.2
100,939 - ABZR87_RS00485 0.27 +0.1
100,939 - ABZR87_RS00485 0.27 +0.3
101,187 + ABZR87_RS00485 0.82 +1.2
101,187 + ABZR87_RS00485 0.82 -0.8
101,188 - ABZR87_RS00485 0.82 +0.0
101,188 - ABZR87_RS00485 0.82 +0.4
101,188 - ABZR87_RS00485 0.82 +0.6
101,280 + +0.0
101,280 + +1.4
101,280 + +0.9
101,280 + +0.3
101,281 - +0.6
101,281 - +1.2
101,281 - -0.6
101,281 - +0.3
101,281 - -1.2
101,281 - -0.4
101,281 - +0.3
101,407 - ABZR87_RS00490 0.10 +1.5
101,525 + ABZR87_RS00490 0.23 +1.1
101,525 + ABZR87_RS00490 0.23 +0.6
101,525 + ABZR87_RS00490 0.23 +0.4
101,525 + ABZR87_RS00490 0.23 +0.2
101,526 - ABZR87_RS00490 0.23 +0.4
101,526 - ABZR87_RS00490 0.23 +1.3
101,526 - ABZR87_RS00490 0.23 -1.7
101,561 + ABZR87_RS00490 0.26 +1.1
101,561 + ABZR87_RS00490 0.26 -0.0
101,562 - ABZR87_RS00490 0.27 +0.7
101,562 - ABZR87_RS00490 0.27 +0.7
101,639 + ABZR87_RS00490 0.34 +0.2
101,744 + ABZR87_RS00490 0.45 +0.6
101,744 + ABZR87_RS00490 0.45 +0.0
101,745 - ABZR87_RS00490 0.45 +0.5
101,745 - ABZR87_RS00490 0.45 -1.1
101,745 - ABZR87_RS00490 0.45 -0.5
101,750 + ABZR87_RS00490 0.46 +2.1
101,987 + ABZR87_RS00490 0.70 +0.5
101,987 + ABZR87_RS00490 0.70 +0.5
101,987 + ABZR87_RS00490 0.70 +0.4
101,988 - ABZR87_RS00490 0.71 -0.2
101,988 - ABZR87_RS00490 0.71 -1.0
101,988 - ABZR87_RS00490 0.71 +0.3
102,185 + -0.0
102,185 + -0.0
102,185 + +0.1
102,185 + +0.6
102,186 - -0.1
102,270 - +0.1
102,306 - -0.2
102,377 + ABZR87_RS00495 0.23 -0.1
102,377 + ABZR87_RS00495 0.23 -0.6
102,377 + ABZR87_RS00495 0.23 -0.0
102,377 + ABZR87_RS00495 0.23 +0.5
102,377 + ABZR87_RS00495 0.23 -0.1
102,377 + ABZR87_RS00495 0.23 +0.1
102,377 + ABZR87_RS00495 0.23 +0.9
102,378 - ABZR87_RS00495 0.24 +0.4
102,378 - ABZR87_RS00495 0.24 -1.2
102,378 - ABZR87_RS00495 0.24 -0.5
102,378 - ABZR87_RS00495 0.24 -0.9
102,378 - ABZR87_RS00495 0.24 -0.1
102,378 - ABZR87_RS00495 0.24 +0.4
102,378 - ABZR87_RS00495 0.24 -0.9
102,393 - ABZR87_RS00495 0.27 +0.8
102,485 + ABZR87_RS00495 0.46 -0.3
102,485 + ABZR87_RS00495 0.46 +0.2
102,486 - ABZR87_RS00495 0.47 +1.0
102,486 - ABZR87_RS00495 0.47 +0.1
102,486 - ABZR87_RS00495 0.47 -1.0
102,486 - ABZR87_RS00495 0.47 -0.1
102,521 + ABZR87_RS00495 0.54 +0.5
102,560 + ABZR87_RS00495 0.62 +0.9
102,560 + ABZR87_RS00495 0.62 +0.4
102,561 - ABZR87_RS00495 0.63 -0.8
102,639 + ABZR87_RS00495 0.79 +0.1
103,063 + ABZR87_RS00500 0.30 +0.6
103,063 + ABZR87_RS00500 0.30 -0.5
103,063 + ABZR87_RS00500 0.30 -1.2
103,063 + ABZR87_RS00500 0.30 +0.8
103,063 + ABZR87_RS00500 0.30 -0.4
103,064 - ABZR87_RS00500 0.30 -0.3
103,064 - ABZR87_RS00500 0.30 -0.5
103,064 - ABZR87_RS00500 0.30 +0.7
103,064 - ABZR87_RS00500 0.30 -0.3

Or see this region's nucleotide sequence