Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000734

Experiment: Motility_chemotaxis, R2A; inner cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000733 and ABIE53_000734 are separated by 161 nucleotidesABIE53_000734 and ABIE53_000735 are separated by 66 nucleotides ABIE53_000733: ABIE53_000733 - MFS family permease, at 790,635 to 791,822 _000733 ABIE53_000734: ABIE53_000734 - single-strand DNA-binding protein, at 791,984 to 792,538 _000734 ABIE53_000735: ABIE53_000735 - hypothetical protein, at 792,605 to 793,405 _000735 Position (kb) 791 792 793Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 791.391 kb on + strand, within ABIE53_000733at 791.391 kb on + strand, within ABIE53_000733at 791.391 kb on + strand, within ABIE53_000733at 791.391 kb on + strand, within ABIE53_000733at 791.392 kb on - strand, within ABIE53_000733at 791.392 kb on - strand, within ABIE53_000733at 791.392 kb on - strand, within ABIE53_000733at 791.392 kb on - strand, within ABIE53_000733at 791.392 kb on - strand, within ABIE53_000733at 791.495 kb on + strand, within ABIE53_000733at 791.495 kb on + strand, within ABIE53_000733at 791.495 kb on + strand, within ABIE53_000733at 791.496 kb on - strand, within ABIE53_000733at 791.515 kb on + strand, within ABIE53_000733at 791.515 kb on + strand, within ABIE53_000733at 791.516 kb on - strand, within ABIE53_000733at 791.516 kb on - strand, within ABIE53_000733at 791.535 kb on - strand, within ABIE53_000733at 791.535 kb on - strand, within ABIE53_000733at 791.568 kb on + strand, within ABIE53_000733at 791.568 kb on + strand, within ABIE53_000733at 791.568 kb on + strand, within ABIE53_000733at 791.569 kb on - strand, within ABIE53_000733at 791.569 kb on - strand, within ABIE53_000733at 791.569 kb on - strand, within ABIE53_000733at 791.569 kb on - strand, within ABIE53_000733at 791.582 kb on + strand, within ABIE53_000733at 791.582 kb on + strand, within ABIE53_000733at 791.582 kb on + strand, within ABIE53_000733at 791.583 kb on - strand, within ABIE53_000733at 791.583 kb on - strand, within ABIE53_000733at 791.583 kb on - strand, within ABIE53_000733at 791.586 kb on - strand, within ABIE53_000733at 791.661 kb on + strand, within ABIE53_000733at 791.661 kb on + strand, within ABIE53_000733at 791.661 kb on + strand, within ABIE53_000733at 791.661 kb on + strand, within ABIE53_000733at 791.662 kb on - strand, within ABIE53_000733at 791.770 kb on + strandat 791.770 kb on + strandat 791.770 kb on + strandat 791.780 kb on + strandat 791.780 kb on + strandat 791.780 kb on + strandat 791.780 kb on + strandat 791.780 kb on + strandat 791.780 kb on + strandat 791.781 kb on - strandat 791.781 kb on - strandat 791.781 kb on - strandat 791.781 kb on - strandat 791.781 kb on - strandat 791.781 kb on - strandat 791.781 kb on - strandat 791.781 kb on - strandat 791.781 kb on - strandat 791.782 kb on + strandat 791.782 kb on + strandat 791.782 kb on + strandat 791.782 kb on + strandat 791.782 kb on + strandat 791.846 kb on + strandat 791.846 kb on + strandat 791.846 kb on + strandat 791.846 kb on + strandat 791.846 kb on + strandat 792.696 kb on + strand, within ABIE53_000735at 792.696 kb on + strand, within ABIE53_000735at 792.696 kb on + strand, within ABIE53_000735at 792.696 kb on + strand, within ABIE53_000735at 792.696 kb on + strand, within ABIE53_000735at 792.696 kb on + strand, within ABIE53_000735at 792.696 kb on + strand, within ABIE53_000735at 792.696 kb on + strand, within ABIE53_000735at 792.696 kb on + strand, within ABIE53_000735at 792.697 kb on - strand, within ABIE53_000735at 792.697 kb on - strand, within ABIE53_000735at 792.697 kb on - strand, within ABIE53_000735at 792.697 kb on - strand, within ABIE53_000735at 792.697 kb on - strand, within ABIE53_000735at 792.697 kb on - strand, within ABIE53_000735at 792.697 kb on - strand, within ABIE53_000735at 792.697 kb on - strand, within ABIE53_000735at 792.697 kb on - strand, within ABIE53_000735at 792.700 kb on + strand, within ABIE53_000735at 792.701 kb on - strand, within ABIE53_000735at 792.701 kb on - strand, within ABIE53_000735at 792.701 kb on - strand, within ABIE53_000735at 792.701 kb on - strand, within ABIE53_000735at 792.730 kb on + strand, within ABIE53_000735at 792.730 kb on + strand, within ABIE53_000735at 792.731 kb on - strand, within ABIE53_000735at 792.731 kb on - strand, within ABIE53_000735at 792.731 kb on - strand, within ABIE53_000735at 792.741 kb on - strand, within ABIE53_000735at 792.838 kb on + strand, within ABIE53_000735at 792.838 kb on + strand, within ABIE53_000735at 792.838 kb on + strand, within ABIE53_000735at 792.838 kb on + strand, within ABIE53_000735at 792.838 kb on + strand, within ABIE53_000735at 792.839 kb on - strand, within ABIE53_000735at 792.839 kb on - strand, within ABIE53_000735at 792.839 kb on - strand, within ABIE53_000735at 792.839 kb on - strand, within ABIE53_000735at 793.092 kb on + strand, within ABIE53_000735at 793.092 kb on + strand, within ABIE53_000735at 793.092 kb on + strand, within ABIE53_000735at 793.093 kb on - strand, within ABIE53_000735at 793.093 kb on - strand, within ABIE53_000735at 793.134 kb on + strand, within ABIE53_000735at 793.134 kb on + strand, within ABIE53_000735at 793.135 kb on - strand, within ABIE53_000735at 793.176 kb on + strand, within ABIE53_000735at 793.176 kb on + strand, within ABIE53_000735at 793.176 kb on + strand, within ABIE53_000735at 793.176 kb on + strand, within ABIE53_000735at 793.176 kb on + strand, within ABIE53_000735at 793.177 kb on - strand, within ABIE53_000735at 793.177 kb on - strand, within ABIE53_000735at 793.277 kb on + strand, within ABIE53_000735at 793.277 kb on + strand, within ABIE53_000735at 793.277 kb on + strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.278 kb on - strand, within ABIE53_000735at 793.394 kb on + strandat 793.394 kb on + strandat 793.395 kb on - strandat 793.405 kb on + strandat 793.405 kb on + strandat 793.405 kb on + strandat 793.405 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_chemotaxis, R2A; inner cut
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791,391 + ABIE53_000733 0.64 -1.0
791,391 + ABIE53_000733 0.64 +0.0
791,391 + ABIE53_000733 0.64 -1.4
791,391 + ABIE53_000733 0.64 -1.0
791,392 - ABIE53_000733 0.64 -0.9
791,392 - ABIE53_000733 0.64 -1.4
791,392 - ABIE53_000733 0.64 -0.5
791,392 - ABIE53_000733 0.64 -1.1
791,392 - ABIE53_000733 0.64 +2.6
791,495 + ABIE53_000733 0.72 +0.6
791,495 + ABIE53_000733 0.72 +0.1
791,495 + ABIE53_000733 0.72 +0.6
791,496 - ABIE53_000733 0.72 -0.8
791,515 + ABIE53_000733 0.74 +0.0
791,515 + ABIE53_000733 0.74 -0.2
791,516 - ABIE53_000733 0.74 -0.4
791,516 - ABIE53_000733 0.74 -2.7
791,535 - ABIE53_000733 0.76 +1.6
791,535 - ABIE53_000733 0.76 -1.0
791,568 + ABIE53_000733 0.79 +0.2
791,568 + ABIE53_000733 0.79 -0.1
791,568 + ABIE53_000733 0.79 -0.4
791,569 - ABIE53_000733 0.79 +0.2
791,569 - ABIE53_000733 0.79 +3.2
791,569 - ABIE53_000733 0.79 -0.8
791,569 - ABIE53_000733 0.79 -0.1
791,582 + ABIE53_000733 0.80 +1.2
791,582 + ABIE53_000733 0.80 -2.5
791,582 + ABIE53_000733 0.80 -1.1
791,583 - ABIE53_000733 0.80 +0.2
791,583 - ABIE53_000733 0.80 -0.8
791,583 - ABIE53_000733 0.80 -0.4
791,586 - ABIE53_000733 0.80 +0.6
791,661 + ABIE53_000733 0.86 +1.3
791,661 + ABIE53_000733 0.86 -1.2
791,661 + ABIE53_000733 0.86 +2.2
791,661 + ABIE53_000733 0.86 -0.4
791,662 - ABIE53_000733 0.86 -0.4
791,770 + -0.7
791,770 + -0.7
791,770 + +1.1
791,780 + +0.6
791,780 + -1.0
791,780 + -1.0
791,780 + -1.4
791,780 + +0.6
791,780 + +0.6
791,781 - -0.1
791,781 - -0.0
791,781 - +0.0
791,781 - -1.7
791,781 - -1.4
791,781 - -2.2
791,781 - +0.6
791,781 - -0.7
791,781 - +1.6
791,782 + +1.5
791,782 + -1.0
791,782 + -1.1
791,782 + +1.0
791,782 + -0.4
791,846 + +0.8
791,846 + +1.4
791,846 + -0.0
791,846 + +1.0
791,846 + -0.9
792,696 + ABIE53_000735 0.11 +0.2
792,696 + ABIE53_000735 0.11 -0.5
792,696 + ABIE53_000735 0.11 -0.3
792,696 + ABIE53_000735 0.11 +2.6
792,696 + ABIE53_000735 0.11 -0.4
792,696 + ABIE53_000735 0.11 +0.6
792,696 + ABIE53_000735 0.11 +2.8
792,696 + ABIE53_000735 0.11 -1.3
792,696 + ABIE53_000735 0.11 +0.4
792,697 - ABIE53_000735 0.11 +0.1
792,697 - ABIE53_000735 0.11 +0.9
792,697 - ABIE53_000735 0.11 +2.9
792,697 - ABIE53_000735 0.11 -0.4
792,697 - ABIE53_000735 0.11 -0.2
792,697 - ABIE53_000735 0.11 +2.2
792,697 - ABIE53_000735 0.11 +2.6
792,697 - ABIE53_000735 0.11 -0.5
792,697 - ABIE53_000735 0.11 -0.9
792,700 + ABIE53_000735 0.12 -0.4
792,701 - ABIE53_000735 0.12 -0.0
792,701 - ABIE53_000735 0.12 -1.5
792,701 - ABIE53_000735 0.12 +0.6
792,701 - ABIE53_000735 0.12 +0.6
792,730 + ABIE53_000735 0.16 +2.4
792,730 + ABIE53_000735 0.16 +0.0
792,731 - ABIE53_000735 0.16 +0.2
792,731 - ABIE53_000735 0.16 +2.6
792,731 - ABIE53_000735 0.16 +0.6
792,741 - ABIE53_000735 0.17 +0.6
792,838 + ABIE53_000735 0.29 +0.0
792,838 + ABIE53_000735 0.29 +1.0
792,838 + ABIE53_000735 0.29 -0.4
792,838 + ABIE53_000735 0.29 -0.6
792,838 + ABIE53_000735 0.29 +2.2
792,839 - ABIE53_000735 0.29 -1.3
792,839 - ABIE53_000735 0.29 -0.3
792,839 - ABIE53_000735 0.29 -1.6
792,839 - ABIE53_000735 0.29 -0.9
793,092 + ABIE53_000735 0.61 +0.5
793,092 + ABIE53_000735 0.61 +1.1
793,092 + ABIE53_000735 0.61 -1.8
793,093 - ABIE53_000735 0.61 +1.0
793,093 - ABIE53_000735 0.61 -0.5
793,134 + ABIE53_000735 0.66 -0.7
793,134 + ABIE53_000735 0.66 -2.2
793,135 - ABIE53_000735 0.66 +1.6
793,176 + ABIE53_000735 0.71 -1.0
793,176 + ABIE53_000735 0.71 -0.7
793,176 + ABIE53_000735 0.71 +0.6
793,176 + ABIE53_000735 0.71 +0.1
793,176 + ABIE53_000735 0.71 -0.8
793,177 - ABIE53_000735 0.71 -0.2
793,177 - ABIE53_000735 0.71 -0.4
793,277 + ABIE53_000735 0.84 +1.6
793,277 + ABIE53_000735 0.84 -0.4
793,277 + ABIE53_000735 0.84 +0.8
793,278 - ABIE53_000735 0.84 -1.4
793,278 - ABIE53_000735 0.84 -0.0
793,278 - ABIE53_000735 0.84 +1.8
793,278 - ABIE53_000735 0.84 +1.2
793,278 - ABIE53_000735 0.84 -0.3
793,278 - ABIE53_000735 0.84 +0.6
793,278 - ABIE53_000735 0.84 -2.0
793,278 - ABIE53_000735 0.84 -1.1
793,278 - ABIE53_000735 0.84 +0.2
793,278 - ABIE53_000735 0.84 -1.0
793,278 - ABIE53_000735 0.84 -0.2
793,278 - ABIE53_000735 0.84 +0.6
793,278 - ABIE53_000735 0.84 -0.4
793,278 - ABIE53_000735 0.84 -3.6
793,278 - ABIE53_000735 0.84 -1.8
793,278 - ABIE53_000735 0.84 +1.6
793,394 + +0.4
793,394 + -0.2
793,395 - -0.6
793,405 + +0.0
793,405 + +0.1
793,405 + +0.3
793,405 + -1.0

Or see this region's nucleotide sequence