Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02314 and SMc02315 overlap by 14 nucleotides SMc02315 and SMc02316 are separated by 202 nucleotides SMc02316 and SMc02317 are separated by 279 nucleotides
SMc02314: SMc02314 - hypothetical protein, at 685,807 to 686,907
SMc02314
SMc02315: SMc02315 - hypothetical protein, at 686,894 to 687,976
SMc02315
SMc02316: SMc02316 - hypothetical protein, at 688,179 to 688,490
SMc02316
SMc02317: SMc02317 - signal peptide protein, at 688,770 to 689,159
SMc02317
Position (kb) 686
687
688 Strain fitness (log2 ratio) -2
-1
0
1
2 at 685.909 kb on - strand at 685.915 kb on + strand at 685.915 kb on + strand at 685.916 kb on - strand at 686.021 kb on - strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.029 kb on + strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.030 kb on - strand, within SMc02314 at 686.129 kb on + strand, within SMc02314 at 686.130 kb on - strand, within SMc02314 at 686.134 kb on + strand, within SMc02314 at 686.143 kb on - strand, within SMc02314 at 686.172 kb on - strand, within SMc02314 at 686.215 kb on + strand, within SMc02314 at 686.621 kb on - strand, within SMc02314 at 686.621 kb on - strand, within SMc02314 at 686.770 kb on - strand, within SMc02314 at 686.851 kb on + strand at 686.851 kb on + strand at 686.852 kb on - strand at 686.854 kb on - strand at 686.873 kb on + strand at 686.905 kb on + strand at 686.906 kb on - strand at 686.906 kb on - strand at 686.909 kb on + strand at 687.038 kb on + strand, within SMc02315 at 687.039 kb on - strand, within SMc02315 at 687.086 kb on + strand, within SMc02315 at 687.141 kb on + strand, within SMc02315 at 687.142 kb on - strand, within SMc02315 at 687.250 kb on + strand, within SMc02315 at 687.462 kb on - strand, within SMc02315 at 687.480 kb on + strand, within SMc02315 at 687.569 kb on + strand, within SMc02315 at 687.569 kb on + strand, within SMc02315 at 687.810 kb on - strand, within SMc02315 at 687.810 kb on - strand, within SMc02315 at 687.894 kb on - strand at 688.749 kb on - strand at 688.749 kb on - strand at 688.777 kb on + strand at 688.783 kb on + strand at 688.783 kb on + strand at 688.784 kb on - strand at 688.829 kb on - strand, within SMc02317 at 688.842 kb on + strand, within SMc02317 at 688.843 kb on - strand, within SMc02317 at 688.888 kb on + strand, within SMc02317 at 688.888 kb on + strand, within SMc02317 at 688.888 kb on + strand, within SMc02317 at 688.889 kb on - strand, within SMc02317 at 688.964 kb on + strand, within SMc02317 at 688.964 kb on + strand, within SMc02317 at 688.965 kb on - strand, within SMc02317 at 688.965 kb on - strand, within SMc02317 at 688.966 kb on + strand, within SMc02317 at 688.967 kb on - strand, within SMc02317 at 688.967 kb on - strand, within SMc02317
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 685,909 - +0.3 685,915 + -0.3 685,915 + -0.6 685,916 - +1.1 686,021 - SMc02314 0.19 +0.1 686,029 + SMc02314 0.20 +1.1 686,029 + SMc02314 0.20 -0.4 686,029 + SMc02314 0.20 -1.3 686,029 + SMc02314 0.20 +0.2 686,029 + SMc02314 0.20 +0.3 686,030 - SMc02314 0.20 -2.3 686,030 - SMc02314 0.20 -0.5 686,030 - SMc02314 0.20 +0.1 686,030 - SMc02314 0.20 -0.2 686,030 - SMc02314 0.20 +0.7 686,030 - SMc02314 0.20 -0.5 686,030 - SMc02314 0.20 +1.3 686,129 + SMc02314 0.29 -0.4 686,130 - SMc02314 0.29 +0.2 686,134 + SMc02314 0.30 +0.4 686,143 - SMc02314 0.31 -1.0 686,172 - SMc02314 0.33 -0.7 686,215 + SMc02314 0.37 +0.4 686,621 - SMc02314 0.74 +0.8 686,621 - SMc02314 0.74 -1.6 686,770 - SMc02314 0.87 -1.3 686,851 + +1.3 686,851 + +0.2 686,852 - +0.1 686,854 - +2.6 686,873 + +0.2 686,905 + -0.4 686,906 - -1.3 686,906 - +0.2 686,909 + -0.0 687,038 + SMc02315 0.13 -0.3 687,039 - SMc02315 0.13 +0.0 687,086 + SMc02315 0.18 -0.2 687,141 + SMc02315 0.23 -0.5 687,142 - SMc02315 0.23 -0.8 687,250 + SMc02315 0.33 -0.3 687,462 - SMc02315 0.52 +0.0 687,480 + SMc02315 0.54 -0.5 687,569 + SMc02315 0.62 -0.9 687,569 + SMc02315 0.62 -0.4 687,810 - SMc02315 0.85 -0.1 687,810 - SMc02315 0.85 -0.3 687,894 - +0.1 688,749 - +0.2 688,749 - +0.2 688,777 + -0.0 688,783 + -0.4 688,783 + -0.8 688,784 - -0.2 688,829 - SMc02317 0.15 +0.3 688,842 + SMc02317 0.18 -1.3 688,843 - SMc02317 0.19 -0.3 688,888 + SMc02317 0.30 +0.7 688,888 + SMc02317 0.30 +2.0 688,888 + SMc02317 0.30 -0.3 688,889 - SMc02317 0.31 -0.4 688,964 + SMc02317 0.50 -0.4 688,964 + SMc02317 0.50 -0.1 688,965 - SMc02317 0.50 +0.3 688,965 - SMc02317 0.50 -2.6 688,966 + SMc02317 0.50 -0.9 688,967 - SMc02317 0.51 -0.1 688,967 - SMc02317 0.51 -0.2
Or see this region's nucleotide sequence