Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00406 and SMc00407 are separated by 10 nucleotides SMc00407 and SMc00408 are separated by 156 nucleotides SMc00408 and SMc00409 are separated by 110 nucleotides SMc00409 and SMc00410 are separated by 248 nucleotides
SMc00406: SMc00406 - 4Fe-4S ferredoxin, at 357,289 to 358,389
SMc00406
SMc00407: SMc00407 - glutathione S-transferase, at 358,400 to 359,092
SMc00407
SMc00408: SMc00408 - UDP pyrophosphate phosphatase, at 359,249 to 360,055
SMc00408
SMc00409: SMc00409 - signal peptide protein, at 360,166 to 360,327
SMc00409
SMc00410: SMc00410 - oxidoreductase, at 360,576 to 361,556
SMc00410
Position (kb) 359
360
361 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 358.401 kb on + strand at 358.402 kb on - strand at 359.228 kb on + strand at 359.228 kb on + strand at 360.071 kb on + strand at 360.072 kb on - strand at 360.425 kb on - strand at 360.562 kb on - strand at 360.599 kb on + strand at 360.599 kb on + strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.601 kb on + strand at 360.602 kb on - strand at 360.602 kb on - strand at 360.602 kb on - strand at 360.624 kb on + strand at 360.631 kb on + strand at 360.631 kb on + strand at 360.631 kb on + strand at 360.632 kb on - strand at 360.675 kb on - strand, within SMc00410 at 360.979 kb on + strand, within SMc00410
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 358,401 + -1.6 358,402 - +0.3 359,228 + +0.5 359,228 + -1.4 360,071 + +1.0 360,072 - -1.1 360,425 - -0.9 360,562 - -2.2 360,599 + +0.8 360,599 + -0.6 360,600 - -0.2 360,600 - -0.9 360,600 - -0.1 360,600 - +0.1 360,601 + +0.9 360,602 - -0.2 360,602 - +0.7 360,602 - -1.6 360,624 + +0.4 360,631 + +0.1 360,631 + -0.3 360,631 + +0.7 360,632 - +0.3 360,675 - SMc00410 0.10 -3.9 360,979 + SMc00410 0.41 +0.1
Or see this region's nucleotide sequence