Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21436

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21435 and SM_b21436 are separated by 36 nucleotidesSM_b21436 and SM_b21437 overlap by 4 nucleotidesSM_b21437 and SM_b21438 are separated by 83 nucleotides SM_b21435: SM_b21435 - allantoate amidohydrolase, at 1,365,106 to 1,366,350 _b21435 SM_b21436: SM_b21436 - C4-dicarboxylate transport system, permease large protein transmembrane, at 1,366,387 to 1,367,667 _b21436 SM_b21437: SM_b21437 - C4-dicarboxylate transport system, permease small protein transmembrane, at 1,367,664 to 1,368,140 _b21437 SM_b21438: SM_b21438 - C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide, at 1,368,224 to 1,369,222 _b21438 Position (kb) 1366 1367 1368Strain fitness (log2 ratio) -1 0 1 2at 1365.663 kb on + strand, within SM_b21435at 1365.663 kb on + strand, within SM_b21435at 1365.663 kb on + strand, within SM_b21435at 1365.663 kb on + strand, within SM_b21435at 1365.664 kb on - strand, within SM_b21435at 1365.701 kb on + strand, within SM_b21435at 1365.701 kb on + strand, within SM_b21435at 1365.903 kb on - strand, within SM_b21435at 1366.020 kb on + strand, within SM_b21435at 1366.478 kb on + strandat 1366.479 kb on - strandat 1366.551 kb on + strand, within SM_b21436at 1366.552 kb on - strand, within SM_b21436at 1366.552 kb on - strand, within SM_b21436at 1366.896 kb on - strand, within SM_b21436at 1366.896 kb on - strand, within SM_b21436at 1366.896 kb on - strand, within SM_b21436at 1366.922 kb on + strand, within SM_b21436at 1366.922 kb on + strand, within SM_b21436at 1367.200 kb on + strand, within SM_b21436at 1367.200 kb on + strand, within SM_b21436at 1367.201 kb on - strand, within SM_b21436at 1367.201 kb on - strand, within SM_b21436at 1367.551 kb on + strandat 1367.552 kb on - strandat 1367.570 kb on + strandat 1367.731 kb on + strand, within SM_b21437at 1367.790 kb on + strand, within SM_b21437at 1367.790 kb on + strand, within SM_b21437at 1367.791 kb on - strand, within SM_b21437at 1367.850 kb on + strand, within SM_b21437at 1368.017 kb on - strand, within SM_b21437at 1368.087 kb on + strand, within SM_b21437at 1368.096 kb on + strandat 1368.097 kb on - strandat 1368.097 kb on - strandat 1368.097 kb on - strandat 1368.097 kb on - strandat 1368.225 kb on + strandat 1368.225 kb on + strandat 1368.235 kb on - strandat 1368.529 kb on - strand, within SM_b21438at 1368.529 kb on - strand, within SM_b21438at 1368.543 kb on + strand, within SM_b21438at 1368.543 kb on + strand, within SM_b21438at 1368.616 kb on - strand, within SM_b21438at 1368.617 kb on + strand, within SM_b21438at 1368.617 kb on + strand, within SM_b21438at 1368.618 kb on - strand, within SM_b21438at 1368.618 kb on - strand, within SM_b21438

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,365,663 + SM_b21435 0.45 -0.4
1,365,663 + SM_b21435 0.45 -0.3
1,365,663 + SM_b21435 0.45 -0.4
1,365,663 + SM_b21435 0.45 +0.1
1,365,664 - SM_b21435 0.45 -0.2
1,365,701 + SM_b21435 0.48 -0.7
1,365,701 + SM_b21435 0.48 -0.2
1,365,903 - SM_b21435 0.64 +0.1
1,366,020 + SM_b21435 0.73 +0.5
1,366,478 + +0.1
1,366,479 - +1.4
1,366,551 + SM_b21436 0.13 -0.4
1,366,552 - SM_b21436 0.13 -0.8
1,366,552 - SM_b21436 0.13 +0.0
1,366,896 - SM_b21436 0.40 -0.2
1,366,896 - SM_b21436 0.40 -0.6
1,366,896 - SM_b21436 0.40 -0.5
1,366,922 + SM_b21436 0.42 -0.7
1,366,922 + SM_b21436 0.42 +0.3
1,367,200 + SM_b21436 0.63 -0.7
1,367,200 + SM_b21436 0.63 +1.2
1,367,201 - SM_b21436 0.64 +0.6
1,367,201 - SM_b21436 0.64 +2.6
1,367,551 + -1.6
1,367,552 - -0.5
1,367,570 + -0.5
1,367,731 + SM_b21437 0.14 -0.3
1,367,790 + SM_b21437 0.26 -0.2
1,367,790 + SM_b21437 0.26 +1.4
1,367,791 - SM_b21437 0.27 -0.9
1,367,850 + SM_b21437 0.39 -1.5
1,368,017 - SM_b21437 0.74 -0.2
1,368,087 + SM_b21437 0.89 -0.1
1,368,096 + -0.7
1,368,097 - -0.3
1,368,097 - -0.1
1,368,097 - -0.5
1,368,097 - -0.2
1,368,225 + +0.1
1,368,225 + +0.2
1,368,235 - +0.5
1,368,529 - SM_b21438 0.31 -0.0
1,368,529 - SM_b21438 0.31 +1.4
1,368,543 + SM_b21438 0.32 +0.3
1,368,543 + SM_b21438 0.32 +1.3
1,368,616 - SM_b21438 0.39 +0.5
1,368,617 + SM_b21438 0.39 +2.3
1,368,617 + SM_b21438 0.39 +0.7
1,368,618 - SM_b21438 0.39 +0.5
1,368,618 - SM_b21438 0.39 +2.4

Or see this region's nucleotide sequence