Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20998

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20996 and SM_b20997 are separated by 85 nucleotidesSM_b20997 and SM_b20998 are separated by 159 nucleotidesSM_b20998 and SM_b20999 are separated by 9 nucleotides SM_b20996: SM_b20996 - hypothetical protein, at 1,232,629 to 1,233,297 _b20996 SM_b20997: SM_b20997 - nitrate reductase, at 1,233,383 to 1,233,967 _b20997 SM_b20998: SM_b20998 - hypothetical protein, at 1,234,127 to 1,235,131 _b20998 SM_b20999: SM_b20999 - transporter, at 1,235,141 to 1,236,403 _b20999 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -2 -1 0 1at 1233.345 kb on - strandat 1233.366 kb on - strandat 1233.366 kb on - strandat 1233.366 kb on - strandat 1233.385 kb on - strandat 1233.506 kb on + strand, within SM_b20997at 1233.507 kb on - strand, within SM_b20997at 1233.507 kb on - strand, within SM_b20997at 1233.633 kb on - strand, within SM_b20997at 1233.768 kb on + strand, within SM_b20997at 1233.769 kb on - strand, within SM_b20997at 1233.769 kb on - strand, within SM_b20997at 1233.845 kb on - strand, within SM_b20997at 1233.845 kb on - strand, within SM_b20997at 1233.845 kb on - strand, within SM_b20997at 1233.845 kb on - strand, within SM_b20997at 1233.846 kb on + strand, within SM_b20997at 1233.846 kb on + strand, within SM_b20997at 1233.846 kb on + strand, within SM_b20997at 1233.847 kb on - strand, within SM_b20997at 1233.938 kb on + strandat 1233.959 kb on + strandat 1233.960 kb on - strandat 1233.999 kb on + strandat 1234.031 kb on - strandat 1234.037 kb on + strandat 1234.134 kb on + strandat 1234.314 kb on - strand, within SM_b20998at 1234.314 kb on - strand, within SM_b20998at 1234.365 kb on - strand, within SM_b20998at 1234.661 kb on + strand, within SM_b20998at 1234.662 kb on - strand, within SM_b20998at 1234.662 kb on - strand, within SM_b20998at 1234.662 kb on - strand, within SM_b20998at 1234.662 kb on - strand, within SM_b20998at 1234.715 kb on + strand, within SM_b20998at 1234.716 kb on - strand, within SM_b20998at 1234.716 kb on - strand, within SM_b20998at 1234.716 kb on - strand, within SM_b20998at 1234.835 kb on + strand, within SM_b20998at 1234.835 kb on + strand, within SM_b20998at 1234.836 kb on - strand, within SM_b20998at 1234.924 kb on + strand, within SM_b20998at 1234.924 kb on + strand, within SM_b20998at 1234.940 kb on + strand, within SM_b20998at 1234.940 kb on + strand, within SM_b20998at 1234.941 kb on - strand, within SM_b20998at 1235.069 kb on + strandat 1235.069 kb on + strandat 1235.070 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,233,345 - -0.3
1,233,366 - -0.1
1,233,366 - -0.9
1,233,366 - -1.2
1,233,385 - -1.2
1,233,506 + SM_b20997 0.21 +1.1
1,233,507 - SM_b20997 0.21 +0.4
1,233,507 - SM_b20997 0.21 -1.8
1,233,633 - SM_b20997 0.43 -0.1
1,233,768 + SM_b20997 0.66 -1.8
1,233,769 - SM_b20997 0.66 -0.3
1,233,769 - SM_b20997 0.66 -0.1
1,233,845 - SM_b20997 0.79 -0.2
1,233,845 - SM_b20997 0.79 +0.2
1,233,845 - SM_b20997 0.79 +0.2
1,233,845 - SM_b20997 0.79 -0.4
1,233,846 + SM_b20997 0.79 -1.1
1,233,846 + SM_b20997 0.79 -0.4
1,233,846 + SM_b20997 0.79 +0.2
1,233,847 - SM_b20997 0.79 -0.7
1,233,938 + -0.4
1,233,959 + +0.5
1,233,960 - -0.3
1,233,999 + +0.1
1,234,031 - +0.0
1,234,037 + +0.3
1,234,134 + +0.1
1,234,314 - SM_b20998 0.19 -0.4
1,234,314 - SM_b20998 0.19 -0.5
1,234,365 - SM_b20998 0.24 +0.6
1,234,661 + SM_b20998 0.53 -0.1
1,234,662 - SM_b20998 0.53 -0.2
1,234,662 - SM_b20998 0.53 -0.3
1,234,662 - SM_b20998 0.53 -0.1
1,234,662 - SM_b20998 0.53 +0.8
1,234,715 + SM_b20998 0.59 -0.2
1,234,716 - SM_b20998 0.59 +0.0
1,234,716 - SM_b20998 0.59 -0.8
1,234,716 - SM_b20998 0.59 +0.4
1,234,835 + SM_b20998 0.70 -0.1
1,234,835 + SM_b20998 0.70 +1.2
1,234,836 - SM_b20998 0.71 -0.6
1,234,924 + SM_b20998 0.79 -0.9
1,234,924 + SM_b20998 0.79 +0.3
1,234,940 + SM_b20998 0.81 +0.1
1,234,940 + SM_b20998 0.81 +0.7
1,234,941 - SM_b20998 0.81 +0.1
1,235,069 + -1.2
1,235,069 + +0.9
1,235,070 - -0.1

Or see this region's nucleotide sequence