Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20820 and SM_b20821 are separated by 80 nucleotides SM_b20821 and SM_b20822 are separated by 244 nucleotides
SM_b20820: SM_b20820 - ferredoxin reductase, at 608,691 to 609,920
_b20820
SM_b20821: SM_b20821 - ATPGTP-binding hydroxymethyltransferase, at 610,001 to 610,801
_b20821
SM_b20822: SM_b20822 - cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833, at 611,046 to 611,870
_b20822
Position (kb) 610
611 Strain fitness (log2 ratio) -2
-1
0
1 at 609.104 kb on + strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.497 kb on - strand, within SM_b20820 at 609.537 kb on + strand, within SM_b20820 at 609.538 kb on - strand, within SM_b20820 at 609.663 kb on + strand, within SM_b20820 at 609.664 kb on - strand, within SM_b20820 at 609.923 kb on - strand at 609.988 kb on - strand at 610.229 kb on + strand, within SM_b20821 at 610.229 kb on + strand, within SM_b20821 at 610.230 kb on - strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.610 kb on + strand, within SM_b20821 at 610.611 kb on - strand, within SM_b20821 at 610.631 kb on + strand, within SM_b20821 at 610.631 kb on + strand, within SM_b20821 at 610.653 kb on - strand, within SM_b20821 at 610.924 kb on + strand at 610.925 kb on - strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.078 kb on - strand at 611.078 kb on - strand at 611.181 kb on + strand, within SM_b20822 at 611.182 kb on - strand, within SM_b20822 at 611.316 kb on + strand, within SM_b20822 at 611.376 kb on + strand, within SM_b20822 at 611.377 kb on - strand, within SM_b20822 at 611.377 kb on - strand, within SM_b20822 at 611.381 kb on + strand, within SM_b20822 at 611.471 kb on + strand, within SM_b20822 at 611.598 kb on + strand, within SM_b20822 at 611.782 kb on - strand, within SM_b20822
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 609,104 + SM_b20820 0.34 -0.3 609,104 + SM_b20820 0.34 -0.4 609,105 - SM_b20820 0.34 -0.0 609,105 - SM_b20820 0.34 +0.4 609,105 - SM_b20820 0.34 +0.1 609,497 - SM_b20820 0.66 -0.4 609,537 + SM_b20820 0.69 -1.3 609,538 - SM_b20820 0.69 +0.2 609,663 + SM_b20820 0.79 -0.6 609,664 - SM_b20820 0.79 +0.7 609,923 - -0.1 609,988 - -0.3 610,229 + SM_b20821 0.28 +1.4 610,229 + SM_b20821 0.28 +0.3 610,230 - SM_b20821 0.29 -0.1 610,568 + SM_b20821 0.71 +0.4 610,568 + SM_b20821 0.71 +1.3 610,568 + SM_b20821 0.71 +0.2 610,610 + SM_b20821 0.76 -0.4 610,611 - SM_b20821 0.76 -0.3 610,631 + SM_b20821 0.79 +0.9 610,631 + SM_b20821 0.79 +0.5 610,653 - SM_b20821 0.81 +0.9 610,924 + +0.5 610,925 - -0.2 611,077 + -0.7 611,077 + +0.6 611,077 + +1.2 611,077 + -0.2 611,077 + +0.4 611,078 - +0.4 611,078 - -1.4 611,181 + SM_b20822 0.16 +1.4 611,182 - SM_b20822 0.16 -0.2 611,316 + SM_b20822 0.33 -1.8 611,376 + SM_b20822 0.40 -0.1 611,377 - SM_b20822 0.40 -1.1 611,377 - SM_b20822 0.40 -0.3 611,381 + SM_b20822 0.41 -1.2 611,471 + SM_b20822 0.52 -0.6 611,598 + SM_b20822 0.67 +0.4 611,782 - SM_b20822 0.89 -0.5
Or see this region's nucleotide sequence