Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06275

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06270 and RS_RS06275 are separated by 143 nucleotidesRS_RS06275 and RS_RS06280 are separated by 10 nucleotidesRS_RS06280 and RS_RS06285 are separated by 1 nucleotides RS_RS06270: RS_RS06270 - ATP-dependent RNA helicase HrpA, at 1,327,012 to 1,331,007 _RS06270 RS_RS06275: RS_RS06275 - YncE family protein, at 1,331,151 to 1,332,143 _RS06275 RS_RS06280: RS_RS06280 - polysaccharide deacetylase family protein, at 1,332,154 to 1,332,975 _RS06280 RS_RS06285: RS_RS06285 - sterol desaturase family protein, at 1,332,977 to 1,333,951 _RS06285 Position (kb) 1331 1332 1333Strain fitness (log2 ratio) -1 0 1 2 3at 1330.362 kb on + strand, within RS_RS06270at 1330.362 kb on + strand, within RS_RS06270at 1330.363 kb on - strand, within RS_RS06270at 1331.150 kb on + strandat 1331.150 kb on + strandat 1331.150 kb on + strandat 1331.538 kb on + strand, within RS_RS06275at 1332.114 kb on + strandat 1332.114 kb on + strandat 1332.272 kb on - strand, within RS_RS06280at 1332.459 kb on + strand, within RS_RS06280at 1332.460 kb on - strand, within RS_RS06280at 1332.475 kb on + strand, within RS_RS06280at 1332.478 kb on + strand, within RS_RS06280at 1332.479 kb on - strand, within RS_RS06280at 1333.052 kb on + strandat 1333.052 kb on + strandat 1333.053 kb on - strandat 1333.053 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
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1,330,362 + RS_RS06270 0.84 -0.8
1,330,362 + RS_RS06270 0.84 -0.8
1,330,363 - RS_RS06270 0.84 -0.4
1,331,150 + -0.6
1,331,150 + +0.9
1,331,150 + +0.4
1,331,538 + RS_RS06275 0.39 +0.9
1,332,114 + -0.4
1,332,114 + +0.4
1,332,272 - RS_RS06280 0.14 -0.6
1,332,459 + RS_RS06280 0.37 +3.0
1,332,460 - RS_RS06280 0.37 +0.0
1,332,475 + RS_RS06280 0.39 +0.2
1,332,478 + RS_RS06280 0.39 +0.5
1,332,479 - RS_RS06280 0.40 -1.1
1,333,052 + +0.9
1,333,052 + -1.1
1,333,053 - -0.1
1,333,053 - -0.7

Or see this region's nucleotide sequence