Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02530 and HSERO_RS02535 are separated by 249 nucleotides HSERO_RS02535 and HSERO_RS02540 are separated by 66 nucleotides
HSERO_RS02530: HSERO_RS02530 - LysR family transcriptional regulator, at 556,695 to 557,579
_RS02530
HSERO_RS02535: HSERO_RS02535 - short-chain dehydrogenase, at 557,829 to 558,578
_RS02535
HSERO_RS02540: HSERO_RS02540 - ABC transporter substrate-binding protein, at 558,645 to 559,682
_RS02540
Position (kb) 557
558
559 Strain fitness (log2 ratio) -2
-1
0
1 at 556.873 kb on + strand, within HSERO_RS02530 at 556.875 kb on + strand, within HSERO_RS02530 at 556.893 kb on + strand, within HSERO_RS02530 at 557.137 kb on - strand, within HSERO_RS02530 at 557.172 kb on - strand, within HSERO_RS02530 at 557.380 kb on + strand, within HSERO_RS02530 at 557.388 kb on - strand, within HSERO_RS02530 at 557.388 kb on - strand, within HSERO_RS02530 at 557.393 kb on - strand, within HSERO_RS02530 at 557.525 kb on - strand at 557.562 kb on + strand at 557.793 kb on - strand at 558.051 kb on + strand, within HSERO_RS02535 at 558.216 kb on + strand, within HSERO_RS02535 at 558.226 kb on + strand, within HSERO_RS02535 at 558.444 kb on + strand, within HSERO_RS02535 at 558.642 kb on - strand at 558.665 kb on + strand at 558.783 kb on + strand, within HSERO_RS02540 at 558.791 kb on - strand, within HSERO_RS02540 at 558.791 kb on - strand, within HSERO_RS02540 at 558.961 kb on - strand at 559.041 kb on + strand, within HSERO_RS02540 at 559.226 kb on + strand, within HSERO_RS02540 at 559.328 kb on + strand, within HSERO_RS02540 at 559.333 kb on + strand, within HSERO_RS02540 at 559.351 kb on - strand, within HSERO_RS02540 at 559.441 kb on - strand, within HSERO_RS02540 at 559.509 kb on + strand, within HSERO_RS02540 at 559.538 kb on - strand, within HSERO_RS02540
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 556,873 + HSERO_RS02530 0.20 +1.4 556,875 + HSERO_RS02530 0.20 -0.6 556,893 + HSERO_RS02530 0.22 -0.5 557,137 - HSERO_RS02530 0.50 -0.9 557,172 - HSERO_RS02530 0.54 +0.6 557,380 + HSERO_RS02530 0.77 -0.3 557,388 - HSERO_RS02530 0.78 -0.0 557,388 - HSERO_RS02530 0.78 -0.5 557,393 - HSERO_RS02530 0.79 +0.0 557,525 - +0.8 557,562 + +0.5 557,793 - -0.5 558,051 + HSERO_RS02535 0.30 -2.4 558,216 + HSERO_RS02535 0.52 -0.2 558,226 + HSERO_RS02535 0.53 -0.3 558,444 + HSERO_RS02535 0.82 +1.4 558,642 - -0.8 558,665 + -0.1 558,783 + HSERO_RS02540 0.13 +0.8 558,791 - HSERO_RS02540 0.14 -1.8 558,791 - HSERO_RS02540 0.14 -0.7 558,961 - +0.6 559,041 + HSERO_RS02540 0.38 +0.5 559,226 + HSERO_RS02540 0.56 +0.3 559,328 + HSERO_RS02540 0.66 +0.3 559,333 + HSERO_RS02540 0.66 +0.4 559,351 - HSERO_RS02540 0.68 +1.3 559,441 - HSERO_RS02540 0.77 -0.1 559,509 + HSERO_RS02540 0.83 +0.3 559,538 - HSERO_RS02540 0.86 +0.8
Or see this region's nucleotide sequence