Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02150 and HSERO_RS02155 are separated by 233 nucleotides HSERO_RS02155 and HSERO_RS02160 are separated by 108 nucleotides HSERO_RS02160 and HSERO_RS02165 are separated by 26 nucleotides
HSERO_RS02150: HSERO_RS02150 - MFS transporter, at 468,153 to 469,328
_RS02150
HSERO_RS02155: HSERO_RS02155 - chorismate mutase, at 469,562 to 470,131
_RS02155
HSERO_RS02160: HSERO_RS02160 - DNA-dependent helicase, at 470,240 to 472,519
_RS02160
HSERO_RS02165: HSERO_RS02165 - molecular chaperone DnaJ, at 472,546 to 473,649
_RS02165
Position (kb) 470
471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 469.627 kb on + strand, within HSERO_RS02155 at 469.750 kb on - strand, within HSERO_RS02155 at 469.843 kb on + strand, within HSERO_RS02155 at 469.999 kb on - strand, within HSERO_RS02155 at 470.170 kb on + strand at 470.193 kb on - strand at 470.193 kb on - strand at 470.254 kb on + strand at 470.460 kb on - strand at 470.510 kb on - strand, within HSERO_RS02160 at 470.588 kb on - strand, within HSERO_RS02160 at 472.267 kb on - strand, within HSERO_RS02160 at 472.296 kb on + strand at 472.331 kb on + strand at 472.451 kb on + strand at 472.544 kb on + strand at 472.606 kb on - strand at 472.606 kb on - strand at 472.645 kb on + strand at 472.678 kb on - strand, within HSERO_RS02165 at 472.933 kb on + strand, within HSERO_RS02165 at 472.995 kb on - strand, within HSERO_RS02165 at 473.224 kb on + strand, within HSERO_RS02165 at 473.346 kb on - strand, within HSERO_RS02165 at 473.473 kb on + strand, within HSERO_RS02165 at 473.481 kb on - strand, within HSERO_RS02165
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 469,627 + HSERO_RS02155 0.11 -0.8 469,750 - HSERO_RS02155 0.33 +0.2 469,843 + HSERO_RS02155 0.49 +0.9 469,999 - HSERO_RS02155 0.77 +0.3 470,170 + -0.0 470,193 - +1.1 470,193 - +0.0 470,254 + +0.4 470,460 - -2.8 470,510 - HSERO_RS02160 0.12 -3.4 470,588 - HSERO_RS02160 0.15 -2.6 472,267 - HSERO_RS02160 0.89 -0.4 472,296 + -0.0 472,331 + -1.2 472,451 + -3.7 472,544 + -0.1 472,606 - -1.4 472,606 - +0.5 472,645 + +1.3 472,678 - HSERO_RS02165 0.12 -2.1 472,933 + HSERO_RS02165 0.35 -0.2 472,995 - HSERO_RS02165 0.41 -1.2 473,224 + HSERO_RS02165 0.61 -0.6 473,346 - HSERO_RS02165 0.72 -1.1 473,473 + HSERO_RS02165 0.84 -1.2 473,481 - HSERO_RS02165 0.85 -0.1
Or see this region's nucleotide sequence