Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02075

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02070 and HSERO_RS02075 overlap by 11 nucleotidesHSERO_RS02075 and HSERO_RS02080 are separated by 70 nucleotidesHSERO_RS02080 and HSERO_RS02085 overlap by 4 nucleotides HSERO_RS02070: HSERO_RS02070 - deoxyribodipyrimidine photolyase, at 452,261 to 453,463 _RS02070 HSERO_RS02075: HSERO_RS02075 - hypothetical protein, at 453,453 to 453,866 _RS02075 HSERO_RS02080: HSERO_RS02080 - Holliday junction resolvase, at 453,937 to 454,479 _RS02080 HSERO_RS02085: HSERO_RS02085 - membrane protein, at 454,476 to 455,417 _RS02085 Position (kb) 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1at 452.608 kb on - strand, within HSERO_RS02070at 452.774 kb on + strand, within HSERO_RS02070at 452.869 kb on - strand, within HSERO_RS02070at 452.973 kb on + strand, within HSERO_RS02070at 453.009 kb on + strand, within HSERO_RS02070at 453.251 kb on + strand, within HSERO_RS02070at 453.328 kb on - strand, within HSERO_RS02070at 453.366 kb on - strandat 453.443 kb on + strandat 453.606 kb on + strand, within HSERO_RS02075at 453.702 kb on + strand, within HSERO_RS02075at 453.755 kb on + strand, within HSERO_RS02075at 453.814 kb on + strand, within HSERO_RS02075at 453.875 kb on - strandat 454.001 kb on + strand, within HSERO_RS02080at 454.373 kb on - strand, within HSERO_RS02080

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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452,608 - HSERO_RS02070 0.29 +0.6
452,774 + HSERO_RS02070 0.43 -0.6
452,869 - HSERO_RS02070 0.51 -1.2
452,973 + HSERO_RS02070 0.59 -0.1
453,009 + HSERO_RS02070 0.62 +0.5
453,251 + HSERO_RS02070 0.82 -0.3
453,328 - HSERO_RS02070 0.89 -1.4
453,366 - -1.3
453,443 + -3.2
453,606 + HSERO_RS02075 0.37 +1.0
453,702 + HSERO_RS02075 0.60 +0.4
453,755 + HSERO_RS02075 0.73 -0.5
453,814 + HSERO_RS02075 0.87 +0.6
453,875 - -0.5
454,001 + HSERO_RS02080 0.12 -2.0
454,373 - HSERO_RS02080 0.80 -1.3

Or see this region's nucleotide sequence