Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02065

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02060 and HSERO_RS02065 are separated by 111 nucleotidesHSERO_RS02065 and HSERO_RS02070 are separated by 507 nucleotides HSERO_RS02060: HSERO_RS02060 - purine biosynthesis protein purH, at 449,132 to 450,703 _RS02060 HSERO_RS02065: HSERO_RS02065 - hypothetical protein, at 450,815 to 451,753 _RS02065 HSERO_RS02070: HSERO_RS02070 - deoxyribodipyrimidine photolyase, at 452,261 to 453,463 _RS02070 Position (kb) 450 451 452Strain fitness (log2 ratio) -1 0 1 2at 450.792 kb on + strandat 450.821 kb on - strandat 450.821 kb on - strandat 451.274 kb on - strand, within HSERO_RS02065at 451.338 kb on - strand, within HSERO_RS02065at 451.474 kb on + strand, within HSERO_RS02065at 451.650 kb on - strand, within HSERO_RS02065at 452.126 kb on + strandat 452.126 kb on + strandat 452.221 kb on - strandat 452.608 kb on - strand, within HSERO_RS02070

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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450,792 + +0.2
450,821 - +0.2
450,821 - +0.2
451,274 - HSERO_RS02065 0.49 +1.3
451,338 - HSERO_RS02065 0.56 +0.1
451,474 + HSERO_RS02065 0.70 +0.5
451,650 - HSERO_RS02065 0.89 +1.2
452,126 + +1.9
452,126 + -0.0
452,221 - -0.1
452,608 - HSERO_RS02070 0.29 +0.6

Or see this region's nucleotide sequence