Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22700

Experiment: Protocatechuic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Protocatechuic Acid (C)
1,450,665	+		ABZR87_RS22695	0.56	-0.1
1,450,666	-		ABZR87_RS22695	0.56	+0.5
1,450,796	+		ABZR87_RS22695	0.66	+0.5
1,450,796	+		ABZR87_RS22695	0.66	+0.2
1,450,796	+		ABZR87_RS22695	0.66	+3.0
1,450,797	-		ABZR87_RS22695	0.66	+1.7
1,450,797	-		ABZR87_RS22695	0.66	-1.3
1,450,797	-		ABZR87_RS22695	0.66	+0.6
1,450,797	-		ABZR87_RS22695	0.66	-0.8
1,450,797	-		ABZR87_RS22695	0.66	+0.2
1,450,797	-		ABZR87_RS22695	0.66	-1.4
1,450,841	+		ABZR87_RS22695	0.69	+1.5
1,450,841	+		ABZR87_RS22695	0.69	+0.5
1,450,841	+		ABZR87_RS22695	0.69	-0.5
1,450,842	-		ABZR87_RS22695	0.69	+0.1
1,450,842	-		ABZR87_RS22695	0.69	+0.5
1,450,842	-		ABZR87_RS22695	0.69	+1.0
1,450,842	-		ABZR87_RS22695	0.69	-1.0
1,451,102	+		ABZR87_RS22695	0.88	+0.8
1,451,102	+		ABZR87_RS22695	0.88	+0.5
1,451,102	+		ABZR87_RS22695	0.88	+0.5
1,451,102	+		ABZR87_RS22695	0.88	+1.1
1,451,103	-		ABZR87_RS22695	0.88	-0.7
1,451,392	+				-0.1
1,451,392	+				+0.6
1,451,392	+				+0.9
1,451,392	+				+1.1
1,451,392	+				+1.3
1,451,393	-				+0.3
1,451,393	-				+0.5
1,451,393	-				+2.5
1,451,393	-				+0.7
1,451,393	-				+1.8
1,451,394	+				+1.1
1,451,394	+				+0.3
1,451,394	+				+0.8
1,451,394	+				-0.1
1,451,395	-				-0.2
1,451,466	-				+1.2
1,451,514	+				+1.5
1,451,514	+				+0.1
1,451,514	+				-0.2
1,451,514	+				+0.4
1,451,514	+				+1.7
1,451,515	-				-0.2
1,451,515	-				-0.9
1,451,515	-				+0.2
1,451,515	-				+1.6
1,451,515	-				+0.9
1,451,557	+				+1.2
1,451,557	+				+0.2
1,451,569	+				+2.5
1,451,569	+				+1.0
1,451,801	+		ABZR87_RS22700	0.11	+0.1
1,451,801	+		ABZR87_RS22700	0.11	+2.0
1,451,801	+		ABZR87_RS22700	0.11	-0.0
1,451,801	+		ABZR87_RS22700	0.11	+2.5
1,451,802	-		ABZR87_RS22700	0.11	+2.7
1,451,802	-		ABZR87_RS22700	0.11	+0.2
1,451,859	-		ABZR87_RS22700	0.14	+1.1
1,451,954	+		ABZR87_RS22700	0.20	+2.2
1,451,954	+		ABZR87_RS22700	0.20	+2.1
1,451,954	+		ABZR87_RS22700	0.20	+0.2
1,451,955	-		ABZR87_RS22700	0.20	+2.2
1,451,955	-		ABZR87_RS22700	0.20	+0.7
1,452,053	+		ABZR87_RS22700	0.26	+1.7
1,452,054	-		ABZR87_RS22700	0.26	+0.6
1,452,068	+		ABZR87_RS22700	0.27	+0.5
1,452,068	+		ABZR87_RS22700	0.27	-0.3
1,452,069	-		ABZR87_RS22700	0.27	+0.9
1,452,069	-		ABZR87_RS22700	0.27	+0.7
1,452,389	+		ABZR87_RS22700	0.46	+0.3
1,452,389	+		ABZR87_RS22700	0.46	+1.0
1,452,389	+		ABZR87_RS22700	0.46	+1.2
1,452,390	-		ABZR87_RS22700	0.47	+0.1
1,452,390	-		ABZR87_RS22700	0.47	+0.6
1,452,390	-		ABZR87_RS22700	0.47	+0.9
1,452,464	+		ABZR87_RS22700	0.51	+0.5
1,452,465	-		ABZR87_RS22700	0.51	+1.4
1,452,527	+		ABZR87_RS22700	0.55	+0.6
1,452,527	+		ABZR87_RS22700	0.55	+3.1
1,452,527	+		ABZR87_RS22700	0.55	+0.2
1,452,528	-		ABZR87_RS22700	0.55	+0.7
1,452,528	-		ABZR87_RS22700	0.55	+1.7
1,452,528	-		ABZR87_RS22700	0.55	-1.7
1,452,528	-		ABZR87_RS22700	0.55	+1.8
1,452,569	+		ABZR87_RS22700	0.57	+1.0
1,452,569	+		ABZR87_RS22700	0.57	+1.5
1,452,569	+		ABZR87_RS22700	0.57	+0.9
1,452,569	+		ABZR87_RS22700	0.57	+1.2
1,452,569	+		ABZR87_RS22700	0.57	+2.5
1,452,569	+		ABZR87_RS22700	0.57	-0.3
1,452,570	-		ABZR87_RS22700	0.57	+1.0
1,452,596	+		ABZR87_RS22700	0.59	+0.1
1,452,596	+		ABZR87_RS22700	0.59	+1.0
1,452,597	-		ABZR87_RS22700	0.59	-0.5
1,452,770	+		ABZR87_RS22700	0.70	+0.7
1,452,771	-		ABZR87_RS22700	0.70	+1.0
1,452,896	+		ABZR87_RS22700	0.77	-0.1
1,452,896	+		ABZR87_RS22700	0.77	-0.0
1,452,896	+		ABZR87_RS22700	0.77	+0.5
1,452,897	-		ABZR87_RS22700	0.77	+0.9
1,452,897	-		ABZR87_RS22700	0.77	+0.0
1,452,959	+		ABZR87_RS22700	0.81	+1.0
1,452,959	+		ABZR87_RS22700	0.81	+3.0
1,452,959	+		ABZR87_RS22700	0.81	+1.3
1,452,959	+		ABZR87_RS22700	0.81	+2.1
1,452,959	+		ABZR87_RS22700	0.81	+0.5
1,452,960	-		ABZR87_RS22700	0.81	+4.1
1,452,960	-		ABZR87_RS22700	0.81	-0.5
1,452,960	-		ABZR87_RS22700	0.81	+0.7
1,452,965	+		ABZR87_RS22700	0.81	+2.1
1,452,965	+		ABZR87_RS22700	0.81	+0.9
1,452,965	+		ABZR87_RS22700	0.81	+1.4
1,452,966	-		ABZR87_RS22700	0.81	+1.0
1,452,968	+		ABZR87_RS22700	0.82	+1.5
1,453,035	-		ABZR87_RS22700	0.86	+1.0
1,453,035	-		ABZR87_RS22700	0.86	+0.7
1,453,035	-		ABZR87_RS22700	0.86	+0.7
1,453,094	+		ABZR87_RS22700	0.89	+1.3
1,453,094	+		ABZR87_RS22700	0.89	+0.2
1,453,148	+				-1.8
1,453,148	+				-0.0
1,453,149	-				-0.8
1,453,149	-				+1.3
1,453,369	+				+1.0
1,453,369	+				+0.3
1,453,370	-				-0.3
1,453,400	+				-0.9
1,453,400	+				-1.2
1,453,401	-				+0.3
1,453,401	-				+0.1
1,453,401	-				+0.2
1,453,401	-				-0.1
1,453,401	-				+0.1
1,453,401	-				+1.0
1,453,846	+		ABZR87_RS22705	0.49	-1.0
1,453,846	+		ABZR87_RS22705	0.49	+1.7
1,453,846	+		ABZR87_RS22705	0.49	+1.0
1,453,846	+		ABZR87_RS22705	0.49	+0.6
1,453,847	-		ABZR87_RS22705	0.50	+1.0
1,453,847	-		ABZR87_RS22705	0.50	-0.6
1,453,905	+		ABZR87_RS22705	0.56	+0.8
1,453,905	+		ABZR87_RS22705	0.56	+0.3
1,453,906	-		ABZR87_RS22705	0.57	+1.4
1,454,181	+		ABZR87_RS22705	0.89	-0.3
1,454,181	+		ABZR87_RS22705	0.89	+0.3
1,454,181	+		ABZR87_RS22705	0.89	-0.8
1,454,181	+		ABZR87_RS22705	0.89	+0.0
1,454,181	+		ABZR87_RS22705	0.89	+1.0
1,454,182	-		ABZR87_RS22705	0.89	-0.3
1,454,182	-		ABZR87_RS22705	0.89	-0.1
1,454,182	-		ABZR87_RS22705	0.89	-0.1
1,454,182	-		ABZR87_RS22705	0.89	+0.6
1,454,185	+		ABZR87_RS22705	0.89	+0.2
1,454,185	+		ABZR87_RS22705	0.89	+0.5
1,454,186	-		ABZR87_RS22705	0.90	+0.1