Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20065 and ABZR87_RS20070 are separated by 287 nucleotides ABZR87_RS20070 and ABZR87_RS20075 are separated by 32 nucleotides ABZR87_RS20075 and ABZR87_RS20080 are separated by 0 nucleotides ABZR87_RS20080 and ABZR87_RS20085 are separated by 153 nucleotides
ABZR87_RS20065: ABZR87_RS20065 - universal stress protein, at 877,440 to 877,940
_RS20065
ABZR87_RS20070: ABZR87_RS20070 - CBS domain-containing protein, at 878,228 to 878,695
_RS20070
ABZR87_RS20075: ABZR87_RS20075 - DUF2892 domain-containing protein, at 878,728 to 878,910
_RS20075
ABZR87_RS20080: ABZR87_RS20080 - MgtC/SapB family protein, at 878,911 to 880,137
_RS20080
ABZR87_RS20085: ABZR87_RS20085 - zinc-dependent alcohol dehydrogenase family protein, at 880,291 to 881,301
_RS20085
Position (kb) 878
879
880
881 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 877.936 kb on + strand at 877.936 kb on + strand at 877.936 kb on + strand at 877.936 kb on + strand at 877.937 kb on - strand at 877.937 kb on - strand at 877.937 kb on - strand at 877.937 kb on - strand at 877.937 kb on - strand at 877.937 kb on - strand at 877.937 kb on - strand at 877.937 kb on - strand at 877.937 kb on - strand at 877.937 kb on - strand at 878.026 kb on + strand at 878.026 kb on + strand at 878.026 kb on + strand at 878.027 kb on - strand at 878.027 kb on - strand at 878.027 kb on - strand at 878.027 kb on - strand at 878.027 kb on - strand at 878.103 kb on - strand at 878.103 kb on - strand at 878.195 kb on + strand at 878.195 kb on + strand at 878.195 kb on + strand at 878.195 kb on + strand at 878.195 kb on + strand at 878.196 kb on - strand at 878.196 kb on - strand at 878.196 kb on - strand at 878.196 kb on - strand at 878.197 kb on + strand at 878.198 kb on - strand at 878.209 kb on - strand at 878.693 kb on + strand at 878.882 kb on - strand, within ABZR87_RS20075 at 878.882 kb on - strand, within ABZR87_RS20075 at 878.882 kb on - strand, within ABZR87_RS20075 at 878.912 kb on + strand at 878.913 kb on - strand at 878.913 kb on - strand at 879.252 kb on + strand, within ABZR87_RS20080 at 879.253 kb on - strand, within ABZR87_RS20080 at 879.307 kb on + strand, within ABZR87_RS20080 at 879.308 kb on - strand, within ABZR87_RS20080 at 879.639 kb on + strand, within ABZR87_RS20080 at 879.639 kb on + strand, within ABZR87_RS20080 at 879.639 kb on + strand, within ABZR87_RS20080 at 879.639 kb on + strand, within ABZR87_RS20080 at 879.640 kb on - strand, within ABZR87_RS20080 at 879.640 kb on - strand, within ABZR87_RS20080 at 879.756 kb on + strand, within ABZR87_RS20080 at 879.757 kb on - strand, within ABZR87_RS20080 at 879.757 kb on - strand, within ABZR87_RS20080 at 879.788 kb on + strand, within ABZR87_RS20080 at 879.789 kb on - strand, within ABZR87_RS20080 at 879.789 kb on - strand, within ABZR87_RS20080 at 879.789 kb on - strand, within ABZR87_RS20080 at 879.799 kb on + strand, within ABZR87_RS20080 at 879.799 kb on + strand, within ABZR87_RS20080 at 879.848 kb on + strand, within ABZR87_RS20080 at 879.849 kb on - strand, within ABZR87_RS20080 at 879.849 kb on - strand, within ABZR87_RS20080 at 879.849 kb on - strand, within ABZR87_RS20080 at 880.176 kb on + strand at 880.176 kb on + strand at 880.177 kb on - strand at 880.177 kb on - strand at 880.258 kb on + strand at 880.258 kb on + strand at 880.258 kb on + strand at 880.259 kb on - strand at 880.259 kb on - strand at 880.259 kb on - strand at 880.431 kb on + strand, within ABZR87_RS20085 at 880.431 kb on + strand, within ABZR87_RS20085 at 880.431 kb on + strand, within ABZR87_RS20085 at 880.432 kb on - strand, within ABZR87_RS20085 at 880.639 kb on + strand, within ABZR87_RS20085 at 880.640 kb on - strand, within ABZR87_RS20085 at 880.657 kb on + strand, within ABZR87_RS20085 at 880.657 kb on + strand, within ABZR87_RS20085 at 880.666 kb on + strand, within ABZR87_RS20085 at 880.666 kb on + strand, within ABZR87_RS20085 at 880.666 kb on + strand, within ABZR87_RS20085 at 880.666 kb on + strand, within ABZR87_RS20085 at 880.666 kb on + strand, within ABZR87_RS20085 at 880.667 kb on - strand, within ABZR87_RS20085 at 880.667 kb on - strand, within ABZR87_RS20085 at 880.667 kb on - strand, within ABZR87_RS20085 at 880.667 kb on - strand, within ABZR87_RS20085 at 880.667 kb on - strand, within ABZR87_RS20085 at 880.687 kb on + strand, within ABZR87_RS20085 at 880.688 kb on - strand, within ABZR87_RS20085 at 880.804 kb on + strand, within ABZR87_RS20085 at 880.804 kb on + strand, within ABZR87_RS20085 at 880.804 kb on + strand, within ABZR87_RS20085 at 880.804 kb on + strand, within ABZR87_RS20085 at 880.804 kb on + strand, within ABZR87_RS20085 at 880.804 kb on + strand, within ABZR87_RS20085 at 880.805 kb on - strand, within ABZR87_RS20085 at 880.805 kb on - strand, within ABZR87_RS20085 at 880.805 kb on - strand, within ABZR87_RS20085 at 880.805 kb on - strand, within ABZR87_RS20085 at 880.805 kb on - strand, within ABZR87_RS20085 at 880.805 kb on - strand, within ABZR87_RS20085
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 877,936 + +0.6 877,936 + -0.8 877,936 + +2.3 877,936 + +0.1 877,937 - +0.7 877,937 - +1.6 877,937 - -1.0 877,937 - +0.3 877,937 - -0.3 877,937 - -0.1 877,937 - -0.1 877,937 - +0.8 877,937 - +1.1 877,937 - -0.4 878,026 + -0.6 878,026 + -0.9 878,026 + +1.0 878,027 - +1.5 878,027 - -0.3 878,027 - +0.3 878,027 - +0.8 878,027 - -0.4 878,103 - -0.1 878,103 - -2.1 878,195 + +0.7 878,195 + +0.4 878,195 + +1.1 878,195 + -0.7 878,195 + -0.0 878,196 - +1.5 878,196 - +0.5 878,196 - +1.7 878,196 - +0.0 878,197 + +0.9 878,198 - -2.7 878,209 - -0.5 878,693 + +1.3 878,882 - ABZR87_RS20075 0.84 -1.5 878,882 - ABZR87_RS20075 0.84 -0.3 878,882 - ABZR87_RS20075 0.84 +0.5 878,912 + -1.9 878,913 - -2.6 878,913 - -1.0 879,252 + ABZR87_RS20080 0.28 +1.1 879,253 - ABZR87_RS20080 0.28 -0.1 879,307 + ABZR87_RS20080 0.32 -0.1 879,308 - ABZR87_RS20080 0.32 -0.3 879,639 + ABZR87_RS20080 0.59 -0.4 879,639 + ABZR87_RS20080 0.59 +0.7 879,639 + ABZR87_RS20080 0.59 -0.3 879,639 + ABZR87_RS20080 0.59 +1.2 879,640 - ABZR87_RS20080 0.59 +0.1 879,640 - ABZR87_RS20080 0.59 +0.5 879,756 + ABZR87_RS20080 0.69 +0.4 879,757 - ABZR87_RS20080 0.69 +1.3 879,757 - ABZR87_RS20080 0.69 -0.1 879,788 + ABZR87_RS20080 0.71 -0.6 879,789 - ABZR87_RS20080 0.72 -2.4 879,789 - ABZR87_RS20080 0.72 +0.9 879,789 - ABZR87_RS20080 0.72 +0.9 879,799 + ABZR87_RS20080 0.72 +1.3 879,799 + ABZR87_RS20080 0.72 -0.4 879,848 + ABZR87_RS20080 0.76 +0.3 879,849 - ABZR87_RS20080 0.76 -2.8 879,849 - ABZR87_RS20080 0.76 +0.7 879,849 - ABZR87_RS20080 0.76 +0.7 880,176 + -0.8 880,176 + +0.3 880,177 - +0.0 880,177 - +1.5 880,258 + +0.6 880,258 + -2.1 880,258 + +0.7 880,259 - +1.5 880,259 - -0.7 880,259 - +0.6 880,431 + ABZR87_RS20085 0.14 -0.3 880,431 + ABZR87_RS20085 0.14 +0.5 880,431 + ABZR87_RS20085 0.14 -1.2 880,432 - ABZR87_RS20085 0.14 -0.1 880,639 + ABZR87_RS20085 0.34 +0.7 880,640 - ABZR87_RS20085 0.35 -0.3 880,657 + ABZR87_RS20085 0.36 -0.7 880,657 + ABZR87_RS20085 0.36 +0.6 880,666 + ABZR87_RS20085 0.37 -0.0 880,666 + ABZR87_RS20085 0.37 -0.4 880,666 + ABZR87_RS20085 0.37 -1.4 880,666 + ABZR87_RS20085 0.37 -0.5 880,666 + ABZR87_RS20085 0.37 -0.5 880,667 - ABZR87_RS20085 0.37 +1.7 880,667 - ABZR87_RS20085 0.37 -1.6 880,667 - ABZR87_RS20085 0.37 -0.9 880,667 - ABZR87_RS20085 0.37 -0.8 880,667 - ABZR87_RS20085 0.37 -2.0 880,687 + ABZR87_RS20085 0.39 -0.3 880,688 - ABZR87_RS20085 0.39 +0.7 880,804 + ABZR87_RS20085 0.51 -0.2 880,804 + ABZR87_RS20085 0.51 +0.1 880,804 + ABZR87_RS20085 0.51 -0.7 880,804 + ABZR87_RS20085 0.51 -0.1 880,804 + ABZR87_RS20085 0.51 -0.5 880,804 + ABZR87_RS20085 0.51 +0.5 880,805 - ABZR87_RS20085 0.51 -0.5 880,805 - ABZR87_RS20085 0.51 +0.8 880,805 - ABZR87_RS20085 0.51 -0.7 880,805 - ABZR87_RS20085 0.51 -1.9 880,805 - ABZR87_RS20085 0.51 +2.6 880,805 - ABZR87_RS20085 0.51 +0.2
Or see this region's nucleotide sequence