Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19750 and ABZR87_RS19755 overlap by 14 nucleotides ABZR87_RS19755 and ABZR87_RS19760 are separated by 22 nucleotides ABZR87_RS19760 and ABZR87_RS19765 are separated by 242 nucleotides ABZR87_RS19765 and ABZR87_RS19770 are separated by 122 nucleotides
ABZR87_RS19750: ABZR87_RS19750 - DNA-binding domain-containing protein, at 806,120 to 806,878
_RS19750
ABZR87_RS19755: ABZR87_RS19755 - DUF692 domain-containing protein, at 806,865 to 807,734
_RS19755
ABZR87_RS19760: ABZR87_RS19760 - DUF2282 domain-containing protein, at 807,757 to 808,023
_RS19760
ABZR87_RS19765: ABZR87_RS19765 - hypothetical protein, at 808,266 to 808,796
_RS19765
ABZR87_RS19770: ABZR87_RS19770 - H-NS family nucleoid-associated regulatory protein, at 808,919 to 809,188
_RS19770
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 806.794 kb on - strand, within ABZR87_RS19750 at 807.028 kb on + strand, within ABZR87_RS19755 at 807.029 kb on - strand, within ABZR87_RS19755 at 807.029 kb on - strand, within ABZR87_RS19755 at 807.029 kb on - strand, within ABZR87_RS19755 at 807.029 kb on - strand, within ABZR87_RS19755 at 807.062 kb on + strand, within ABZR87_RS19755 at 807.187 kb on + strand, within ABZR87_RS19755 at 807.301 kb on + strand, within ABZR87_RS19755 at 807.394 kb on + strand, within ABZR87_RS19755 at 807.395 kb on - strand, within ABZR87_RS19755 at 807.617 kb on - strand, within ABZR87_RS19755 at 807.617 kb on - strand, within ABZR87_RS19755 at 807.617 kb on - strand, within ABZR87_RS19755 at 807.617 kb on - strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.758 kb on + strand at 807.815 kb on + strand, within ABZR87_RS19760 at 807.815 kb on + strand, within ABZR87_RS19760 at 807.815 kb on + strand, within ABZR87_RS19760 at 807.815 kb on + strand, within ABZR87_RS19760 at 807.816 kb on - strand, within ABZR87_RS19760 at 807.816 kb on - strand, within ABZR87_RS19760 at 807.926 kb on + strand, within ABZR87_RS19760 at 807.987 kb on + strand, within ABZR87_RS19760 at 808.085 kb on + strand at 808.085 kb on + strand at 808.086 kb on - strand at 808.776 kb on + strand at 808.776 kb on + strand at 808.776 kb on + strand at 808.777 kb on - strand at 808.777 kb on - strand at 808.777 kb on - strand at 808.777 kb on - strand at 808.777 kb on - strand at 808.875 kb on + strand at 808.876 kb on - strand at 808.901 kb on - strand at 808.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 806,794 - ABZR87_RS19750 0.89 +0.6 807,028 + ABZR87_RS19755 0.19 -1.1 807,029 - ABZR87_RS19755 0.19 -0.2 807,029 - ABZR87_RS19755 0.19 +0.2 807,029 - ABZR87_RS19755 0.19 +0.8 807,029 - ABZR87_RS19755 0.19 +1.3 807,062 + ABZR87_RS19755 0.23 -0.2 807,187 + ABZR87_RS19755 0.37 +1.1 807,301 + ABZR87_RS19755 0.50 +3.3 807,394 + ABZR87_RS19755 0.61 -1.8 807,395 - ABZR87_RS19755 0.61 +0.6 807,617 - ABZR87_RS19755 0.86 -0.9 807,617 - ABZR87_RS19755 0.86 +0.2 807,617 - ABZR87_RS19755 0.86 +0.8 807,617 - ABZR87_RS19755 0.86 -0.5 807,622 + ABZR87_RS19755 0.87 -0.4 807,622 + ABZR87_RS19755 0.87 -0.4 807,622 + ABZR87_RS19755 0.87 -0.0 807,622 + ABZR87_RS19755 0.87 -0.9 807,622 + ABZR87_RS19755 0.87 +1.0 807,622 + ABZR87_RS19755 0.87 -1.1 807,623 - ABZR87_RS19755 0.87 -0.2 807,623 - ABZR87_RS19755 0.87 -0.3 807,623 - ABZR87_RS19755 0.87 +0.7 807,623 - ABZR87_RS19755 0.87 +0.7 807,623 - ABZR87_RS19755 0.87 -0.5 807,623 - ABZR87_RS19755 0.87 +0.5 807,623 - ABZR87_RS19755 0.87 +0.4 807,623 - ABZR87_RS19755 0.87 -0.2 807,758 + -0.2 807,815 + ABZR87_RS19760 0.22 +0.4 807,815 + ABZR87_RS19760 0.22 +0.2 807,815 + ABZR87_RS19760 0.22 -1.0 807,815 + ABZR87_RS19760 0.22 +0.7 807,816 - ABZR87_RS19760 0.22 -0.9 807,816 - ABZR87_RS19760 0.22 -0.9 807,926 + ABZR87_RS19760 0.63 -0.2 807,987 + ABZR87_RS19760 0.86 -0.9 808,085 + -0.0 808,085 + -1.3 808,086 - -1.0 808,776 + +0.9 808,776 + -0.1 808,776 + +0.3 808,777 - +0.4 808,777 - +0.9 808,777 - -0.2 808,777 - -1.4 808,777 - +1.3 808,875 + -0.3 808,876 - -0.7 808,901 - -0.7 808,901 - -0.1
Or see this region's nucleotide sequence