Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18665

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18660 and ABZR87_RS18665 are separated by 68 nucleotidesABZR87_RS18665 and ABZR87_RS18670 are separated by 33 nucleotides ABZR87_RS18660: ABZR87_RS18660 - xylulokinase, at 538,949 to 540,457 _RS18660 ABZR87_RS18665: ABZR87_RS18665 - D-arabinitol 4-dehydrogenase, at 540,526 to 541,944 _RS18665 ABZR87_RS18670: ABZR87_RS18670 - ABC transporter ATP-binding protein, at 541,978 to 543,096 _RS18670 Position (kb) 540 541 542Strain fitness (log2 ratio) -2 -1 0 1 2at 539.768 kb on + strand, within ABZR87_RS18660at 539.905 kb on + strand, within ABZR87_RS18660at 539.905 kb on + strand, within ABZR87_RS18660at 539.905 kb on + strand, within ABZR87_RS18660at 539.905 kb on + strand, within ABZR87_RS18660at 539.905 kb on + strand, within ABZR87_RS18660at 539.906 kb on - strand, within ABZR87_RS18660at 539.906 kb on - strand, within ABZR87_RS18660at 539.906 kb on - strand, within ABZR87_RS18660at 539.906 kb on - strand, within ABZR87_RS18660at 539.989 kb on - strand, within ABZR87_RS18660at 539.989 kb on - strand, within ABZR87_RS18660at 539.989 kb on - strand, within ABZR87_RS18660at 540.360 kb on - strandat 540.453 kb on + strandat 540.453 kb on + strandat 540.453 kb on + strandat 540.454 kb on - strandat 540.454 kb on - strandat 540.454 kb on - strandat 540.454 kb on - strandat 540.454 kb on - strandat 540.527 kb on + strandat 540.650 kb on + strandat 540.725 kb on + strand, within ABZR87_RS18665at 540.725 kb on + strand, within ABZR87_RS18665at 540.726 kb on - strand, within ABZR87_RS18665at 540.936 kb on - strand, within ABZR87_RS18665at 541.001 kb on + strand, within ABZR87_RS18665at 541.092 kb on + strand, within ABZR87_RS18665at 541.092 kb on + strand, within ABZR87_RS18665at 541.092 kb on + strand, within ABZR87_RS18665at 541.092 kb on + strand, within ABZR87_RS18665at 541.092 kb on + strand, within ABZR87_RS18665at 541.093 kb on - strand, within ABZR87_RS18665at 541.093 kb on - strand, within ABZR87_RS18665at 541.093 kb on - strand, within ABZR87_RS18665at 541.093 kb on - strand, within ABZR87_RS18665at 541.093 kb on - strand, within ABZR87_RS18665at 541.093 kb on - strand, within ABZR87_RS18665at 541.517 kb on + strand, within ABZR87_RS18665at 541.518 kb on - strand, within ABZR87_RS18665at 541.518 kb on - strand, within ABZR87_RS18665at 541.595 kb on + strand, within ABZR87_RS18665at 541.595 kb on + strand, within ABZR87_RS18665at 541.595 kb on + strand, within ABZR87_RS18665at 541.595 kb on + strand, within ABZR87_RS18665at 541.596 kb on - strand, within ABZR87_RS18665at 541.596 kb on - strand, within ABZR87_RS18665at 541.598 kb on + strand, within ABZR87_RS18665at 541.718 kb on + strand, within ABZR87_RS18665at 541.718 kb on + strand, within ABZR87_RS18665at 541.719 kb on - strand, within ABZR87_RS18665at 541.758 kb on - strand, within ABZR87_RS18665at 541.826 kb on - strandat 541.868 kb on + strandat 541.868 kb on + strandat 541.868 kb on + strandat 541.869 kb on - strandat 542.168 kb on + strand, within ABZR87_RS18670at 542.168 kb on + strand, within ABZR87_RS18670at 542.169 kb on - strand, within ABZR87_RS18670at 542.432 kb on + strand, within ABZR87_RS18670at 542.432 kb on + strand, within ABZR87_RS18670at 542.432 kb on + strand, within ABZR87_RS18670at 542.433 kb on - strand, within ABZR87_RS18670at 542.433 kb on - strand, within ABZR87_RS18670at 542.531 kb on + strand, within ABZR87_RS18670at 542.531 kb on + strand, within ABZR87_RS18670at 542.531 kb on + strand, within ABZR87_RS18670at 542.531 kb on + strand, within ABZR87_RS18670at 542.532 kb on - strand, within ABZR87_RS18670at 542.532 kb on - strand, within ABZR87_RS18670at 542.532 kb on - strand, within ABZR87_RS18670at 542.755 kb on + strand, within ABZR87_RS18670at 542.837 kb on + strand, within ABZR87_RS18670at 542.837 kb on + strand, within ABZR87_RS18670at 542.837 kb on + strand, within ABZR87_RS18670at 542.846 kb on + strand, within ABZR87_RS18670at 542.884 kb on + strand, within ABZR87_RS18670

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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539,768 + ABZR87_RS18660 0.54 -0.5
539,905 + ABZR87_RS18660 0.63 +2.0
539,905 + ABZR87_RS18660 0.63 +0.0
539,905 + ABZR87_RS18660 0.63 -0.5
539,905 + ABZR87_RS18660 0.63 +0.9
539,905 + ABZR87_RS18660 0.63 +1.1
539,906 - ABZR87_RS18660 0.63 +0.3
539,906 - ABZR87_RS18660 0.63 -0.7
539,906 - ABZR87_RS18660 0.63 -0.9
539,906 - ABZR87_RS18660 0.63 -0.6
539,989 - ABZR87_RS18660 0.69 +2.2
539,989 - ABZR87_RS18660 0.69 -0.1
539,989 - ABZR87_RS18660 0.69 -0.9
540,360 - +0.1
540,453 + +0.6
540,453 + -0.5
540,453 + +0.1
540,454 - +0.2
540,454 - +0.2
540,454 - +0.6
540,454 - +1.0
540,454 - -0.6
540,527 + -0.3
540,650 + -1.4
540,725 + ABZR87_RS18665 0.14 +2.0
540,725 + ABZR87_RS18665 0.14 +0.4
540,726 - ABZR87_RS18665 0.14 +0.4
540,936 - ABZR87_RS18665 0.29 +0.8
541,001 + ABZR87_RS18665 0.33 +0.8
541,092 + ABZR87_RS18665 0.40 +0.2
541,092 + ABZR87_RS18665 0.40 +0.9
541,092 + ABZR87_RS18665 0.40 +0.1
541,092 + ABZR87_RS18665 0.40 +0.6
541,092 + ABZR87_RS18665 0.40 -0.1
541,093 - ABZR87_RS18665 0.40 +0.1
541,093 - ABZR87_RS18665 0.40 +0.3
541,093 - ABZR87_RS18665 0.40 -1.0
541,093 - ABZR87_RS18665 0.40 +0.9
541,093 - ABZR87_RS18665 0.40 -0.4
541,093 - ABZR87_RS18665 0.40 -0.9
541,517 + ABZR87_RS18665 0.70 -0.4
541,518 - ABZR87_RS18665 0.70 +0.5
541,518 - ABZR87_RS18665 0.70 +0.1
541,595 + ABZR87_RS18665 0.75 +0.8
541,595 + ABZR87_RS18665 0.75 -0.0
541,595 + ABZR87_RS18665 0.75 -0.3
541,595 + ABZR87_RS18665 0.75 -2.2
541,596 - ABZR87_RS18665 0.75 -0.1
541,596 - ABZR87_RS18665 0.75 +0.2
541,598 + ABZR87_RS18665 0.76 -0.0
541,718 + ABZR87_RS18665 0.84 +0.4
541,718 + ABZR87_RS18665 0.84 +1.4
541,719 - ABZR87_RS18665 0.84 -1.0
541,758 - ABZR87_RS18665 0.87 -0.0
541,826 - +1.0
541,868 + +0.8
541,868 + -1.3
541,868 + +0.9
541,869 - -1.3
542,168 + ABZR87_RS18670 0.17 +0.1
542,168 + ABZR87_RS18670 0.17 -0.9
542,169 - ABZR87_RS18670 0.17 -2.3
542,432 + ABZR87_RS18670 0.41 -0.9
542,432 + ABZR87_RS18670 0.41 +0.2
542,432 + ABZR87_RS18670 0.41 +1.2
542,433 - ABZR87_RS18670 0.41 -1.1
542,433 - ABZR87_RS18670 0.41 +0.3
542,531 + ABZR87_RS18670 0.49 -2.5
542,531 + ABZR87_RS18670 0.49 +2.4
542,531 + ABZR87_RS18670 0.49 +0.3
542,531 + ABZR87_RS18670 0.49 +0.1
542,532 - ABZR87_RS18670 0.50 +0.4
542,532 - ABZR87_RS18670 0.50 -0.0
542,532 - ABZR87_RS18670 0.50 +1.1
542,755 + ABZR87_RS18670 0.69 -0.8
542,837 + ABZR87_RS18670 0.77 -1.9
542,837 + ABZR87_RS18670 0.77 +0.4
542,837 + ABZR87_RS18670 0.77 -0.1
542,846 + ABZR87_RS18670 0.78 -2.2
542,884 + ABZR87_RS18670 0.81 -0.7

Or see this region's nucleotide sequence