Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18345 and ABZR87_RS18350 are separated by 99 nucleotides ABZR87_RS18350 and ABZR87_RS18355 overlap by 4 nucleotides
ABZR87_RS18345: ABZR87_RS18345 - ABC transporter substrate-binding protein, at 481,997 to 482,983
_RS18345
ABZR87_RS18350: ABZR87_RS18350 - sugar ABC transporter ATP-binding protein, at 483,083 to 484,672
_RS18350
ABZR87_RS18355: ABZR87_RS18355 - ABC transporter permease, at 484,669 to 485,718
_RS18355
Position (kb) 483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.264 kb on + strand, within ABZR87_RS18345 at 482.265 kb on - strand, within ABZR87_RS18345 at 482.405 kb on + strand, within ABZR87_RS18345 at 482.406 kb on - strand, within ABZR87_RS18345 at 482.585 kb on + strand, within ABZR87_RS18345 at 482.585 kb on + strand, within ABZR87_RS18345 at 482.585 kb on + strand, within ABZR87_RS18345 at 482.687 kb on + strand, within ABZR87_RS18345 at 482.688 kb on - strand, within ABZR87_RS18345 at 482.688 kb on - strand, within ABZR87_RS18345 at 482.978 kb on + strand at 482.978 kb on + strand at 482.978 kb on + strand at 482.978 kb on + strand at 482.978 kb on + strand at 482.978 kb on + strand at 483.058 kb on + strand at 483.058 kb on + strand at 483.058 kb on + strand at 483.058 kb on + strand at 483.059 kb on - strand at 483.362 kb on - strand, within ABZR87_RS18350 at 483.374 kb on + strand, within ABZR87_RS18350 at 483.374 kb on + strand, within ABZR87_RS18350 at 483.375 kb on - strand, within ABZR87_RS18350 at 483.375 kb on - strand, within ABZR87_RS18350 at 483.523 kb on + strand, within ABZR87_RS18350 at 483.524 kb on - strand, within ABZR87_RS18350 at 483.731 kb on + strand, within ABZR87_RS18350 at 483.732 kb on - strand, within ABZR87_RS18350 at 483.752 kb on - strand, within ABZR87_RS18350 at 484.038 kb on + strand, within ABZR87_RS18350 at 484.227 kb on - strand, within ABZR87_RS18350 at 484.265 kb on + strand, within ABZR87_RS18350 at 484.266 kb on - strand, within ABZR87_RS18350 at 484.266 kb on - strand, within ABZR87_RS18350 at 484.515 kb on + strand at 484.516 kb on - strand at 484.724 kb on + strand at 484.791 kb on + strand, within ABZR87_RS18355 at 484.791 kb on + strand, within ABZR87_RS18355 at 484.805 kb on - strand, within ABZR87_RS18355 at 484.896 kb on + strand, within ABZR87_RS18355 at 484.897 kb on - strand, within ABZR87_RS18355 at 484.987 kb on + strand, within ABZR87_RS18355 at 484.987 kb on + strand, within ABZR87_RS18355 at 484.987 kb on + strand, within ABZR87_RS18355 at 484.988 kb on - strand, within ABZR87_RS18355 at 485.174 kb on - strand, within ABZR87_RS18355 at 485.174 kb on - strand, within ABZR87_RS18355 at 485.176 kb on + strand, within ABZR87_RS18355 at 485.176 kb on + strand, within ABZR87_RS18355 at 485.177 kb on - strand, within ABZR87_RS18355 at 485.207 kb on - strand, within ABZR87_RS18355 at 485.207 kb on - strand, within ABZR87_RS18355 at 485.233 kb on + strand, within ABZR87_RS18355 at 485.233 kb on + strand, within ABZR87_RS18355 at 485.374 kb on + strand, within ABZR87_RS18355 at 485.374 kb on + strand, within ABZR87_RS18355 at 485.375 kb on - strand, within ABZR87_RS18355 at 485.375 kb on - strand, within ABZR87_RS18355 at 485.375 kb on - strand, within ABZR87_RS18355 at 485.375 kb on - strand, within ABZR87_RS18355 at 485.576 kb on - strand, within ABZR87_RS18355 at 485.584 kb on + strand, within ABZR87_RS18355 at 485.585 kb on - strand, within ABZR87_RS18355
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 482,264 + ABZR87_RS18345 0.27 -0.1 482,265 - ABZR87_RS18345 0.27 +0.1 482,405 + ABZR87_RS18345 0.41 -0.1 482,406 - ABZR87_RS18345 0.41 -0.0 482,585 + ABZR87_RS18345 0.60 -0.5 482,585 + ABZR87_RS18345 0.60 -0.1 482,585 + ABZR87_RS18345 0.60 -0.2 482,687 + ABZR87_RS18345 0.70 +0.0 482,688 - ABZR87_RS18345 0.70 +0.1 482,688 - ABZR87_RS18345 0.70 -0.6 482,978 + +0.6 482,978 + +0.7 482,978 + -0.3 482,978 + +0.1 482,978 + -0.9 482,978 + -1.0 483,058 + +0.9 483,058 + -0.2 483,058 + +0.6 483,058 + -0.5 483,059 - +0.1 483,362 - ABZR87_RS18350 0.18 -0.2 483,374 + ABZR87_RS18350 0.18 +1.1 483,374 + ABZR87_RS18350 0.18 -1.1 483,375 - ABZR87_RS18350 0.18 -0.8 483,375 - ABZR87_RS18350 0.18 -1.0 483,523 + ABZR87_RS18350 0.28 +0.8 483,524 - ABZR87_RS18350 0.28 -0.2 483,731 + ABZR87_RS18350 0.41 +0.9 483,732 - ABZR87_RS18350 0.41 -1.1 483,752 - ABZR87_RS18350 0.42 -0.8 484,038 + ABZR87_RS18350 0.60 -0.8 484,227 - ABZR87_RS18350 0.72 +0.8 484,265 + ABZR87_RS18350 0.74 +0.7 484,266 - ABZR87_RS18350 0.74 -0.3 484,266 - ABZR87_RS18350 0.74 -2.5 484,515 + -0.8 484,516 - -0.4 484,724 + -0.6 484,791 + ABZR87_RS18355 0.12 -0.6 484,791 + ABZR87_RS18355 0.12 +0.7 484,805 - ABZR87_RS18355 0.13 +0.2 484,896 + ABZR87_RS18355 0.22 -1.5 484,897 - ABZR87_RS18355 0.22 +0.8 484,987 + ABZR87_RS18355 0.30 +0.8 484,987 + ABZR87_RS18355 0.30 -0.4 484,987 + ABZR87_RS18355 0.30 +1.1 484,988 - ABZR87_RS18355 0.30 +0.3 485,174 - ABZR87_RS18355 0.48 -0.3 485,174 - ABZR87_RS18355 0.48 +0.1 485,176 + ABZR87_RS18355 0.48 -1.2 485,176 + ABZR87_RS18355 0.48 +0.7 485,177 - ABZR87_RS18355 0.48 +0.5 485,207 - ABZR87_RS18355 0.51 +0.9 485,207 - ABZR87_RS18355 0.51 +2.4 485,233 + ABZR87_RS18355 0.54 +0.3 485,233 + ABZR87_RS18355 0.54 +2.5 485,374 + ABZR87_RS18355 0.67 +0.1 485,374 + ABZR87_RS18355 0.67 -0.3 485,375 - ABZR87_RS18355 0.67 +0.5 485,375 - ABZR87_RS18355 0.67 +0.2 485,375 - ABZR87_RS18355 0.67 +1.5 485,375 - ABZR87_RS18355 0.67 +0.3 485,576 - ABZR87_RS18355 0.86 +1.0 485,584 + ABZR87_RS18355 0.87 -1.4 485,585 - ABZR87_RS18355 0.87 -0.7
Or see this region's nucleotide sequence