Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06125

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06120 and ABZR87_RS06125 are separated by 185 nucleotidesABZR87_RS06125 and ABZR87_RS06130 are separated by 29 nucleotidesABZR87_RS06130 and ABZR87_RS06135 are separated by 131 nucleotides ABZR87_RS06120: ABZR87_RS06120 - LysR family transcriptional regulator, at 1,306,032 to 1,306,964 _RS06120 ABZR87_RS06125: ABZR87_RS06125 - 3-hydroxybutyryl-CoA dehydrogenase, at 1,307,150 to 1,308,004 _RS06125 ABZR87_RS06130: ABZR87_RS06130 - thioesterase family protein, at 1,308,034 to 1,308,462 _RS06130 ABZR87_RS06135: ABZR87_RS06135 - PhzF family phenazine biosynthesis protein, at 1,308,594 to 1,309,451 _RS06135 Position (kb) 1307 1308 1309Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1306.183 kb on + strand, within ABZR87_RS06120at 1306.183 kb on + strand, within ABZR87_RS06120at 1306.184 kb on - strand, within ABZR87_RS06120at 1306.184 kb on - strand, within ABZR87_RS06120at 1306.277 kb on - strand, within ABZR87_RS06120at 1306.277 kb on - strand, within ABZR87_RS06120at 1306.391 kb on - strand, within ABZR87_RS06120at 1306.442 kb on - strand, within ABZR87_RS06120at 1306.453 kb on + strand, within ABZR87_RS06120at 1306.453 kb on + strand, within ABZR87_RS06120at 1306.453 kb on + strand, within ABZR87_RS06120at 1306.454 kb on - strand, within ABZR87_RS06120at 1306.613 kb on - strand, within ABZR87_RS06120at 1306.683 kb on + strand, within ABZR87_RS06120at 1306.683 kb on + strand, within ABZR87_RS06120at 1306.684 kb on - strand, within ABZR87_RS06120at 1306.684 kb on - strand, within ABZR87_RS06120at 1306.684 kb on - strand, within ABZR87_RS06120at 1306.684 kb on - strand, within ABZR87_RS06120at 1306.684 kb on - strand, within ABZR87_RS06120at 1306.684 kb on - strand, within ABZR87_RS06120at 1306.768 kb on + strand, within ABZR87_RS06120at 1306.768 kb on + strand, within ABZR87_RS06120at 1306.768 kb on + strand, within ABZR87_RS06120at 1306.769 kb on - strand, within ABZR87_RS06120at 1306.769 kb on - strand, within ABZR87_RS06120at 1306.769 kb on - strand, within ABZR87_RS06120at 1306.769 kb on - strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.772 kb on - strand, within ABZR87_RS06120at 1306.772 kb on - strand, within ABZR87_RS06120at 1306.772 kb on - strand, within ABZR87_RS06120at 1306.772 kb on - strand, within ABZR87_RS06120at 1306.772 kb on - strand, within ABZR87_RS06120at 1306.836 kb on - strand, within ABZR87_RS06120at 1307.017 kb on - strandat 1307.081 kb on + strandat 1307.130 kb on + strandat 1307.130 kb on + strandat 1307.130 kb on + strandat 1307.130 kb on + strandat 1307.130 kb on + strandat 1307.130 kb on + strandat 1307.130 kb on + strandat 1307.131 kb on - strandat 1307.131 kb on - strandat 1307.248 kb on + strand, within ABZR87_RS06125at 1307.248 kb on + strand, within ABZR87_RS06125at 1307.249 kb on - strand, within ABZR87_RS06125at 1307.249 kb on - strand, within ABZR87_RS06125at 1307.378 kb on + strand, within ABZR87_RS06125at 1307.378 kb on + strand, within ABZR87_RS06125at 1307.378 kb on + strand, within ABZR87_RS06125at 1307.891 kb on + strand, within ABZR87_RS06125at 1307.891 kb on + strand, within ABZR87_RS06125at 1307.891 kb on + strand, within ABZR87_RS06125at 1307.892 kb on - strand, within ABZR87_RS06125at 1307.892 kb on - strand, within ABZR87_RS06125at 1307.892 kb on - strand, within ABZR87_RS06125at 1307.892 kb on - strand, within ABZR87_RS06125at 1307.916 kb on - strand, within ABZR87_RS06125at 1307.988 kb on - strandat 1307.988 kb on - strandat 1307.988 kb on - strandat 1307.988 kb on - strandat 1307.994 kb on - strandat 1308.043 kb on + strandat 1308.043 kb on + strandat 1308.043 kb on + strandat 1308.043 kb on + strandat 1308.043 kb on + strandat 1308.043 kb on + strandat 1308.043 kb on + strandat 1308.043 kb on + strandat 1308.043 kb on + strandat 1308.044 kb on - strandat 1308.044 kb on - strandat 1308.044 kb on - strandat 1308.044 kb on - strandat 1308.045 kb on + strandat 1308.045 kb on + strandat 1308.045 kb on + strandat 1308.045 kb on + strandat 1308.045 kb on + strandat 1308.045 kb on + strandat 1308.045 kb on + strandat 1308.046 kb on - strandat 1308.046 kb on - strandat 1308.046 kb on - strandat 1308.046 kb on - strandat 1308.046 kb on - strandat 1308.046 kb on - strandat 1308.046 kb on - strandat 1308.046 kb on - strandat 1308.046 kb on - strandat 1308.046 kb on - strandat 1308.046 kb on - strandat 1308.049 kb on + strandat 1308.049 kb on + strandat 1308.049 kb on + strandat 1308.049 kb on + strandat 1308.050 kb on - strandat 1308.050 kb on - strandat 1308.050 kb on - strandat 1308.050 kb on - strandat 1308.050 kb on - strandat 1308.103 kb on + strand, within ABZR87_RS06130at 1308.103 kb on + strand, within ABZR87_RS06130at 1308.104 kb on - strand, within ABZR87_RS06130at 1308.104 kb on - strand, within ABZR87_RS06130at 1308.112 kb on + strand, within ABZR87_RS06130at 1308.217 kb on + strand, within ABZR87_RS06130at 1308.217 kb on + strand, within ABZR87_RS06130at 1308.438 kb on + strandat 1308.449 kb on - strandat 1308.460 kb on + strandat 1308.460 kb on + strandat 1308.604 kb on - strandat 1308.861 kb on + strand, within ABZR87_RS06135at 1308.861 kb on + strand, within ABZR87_RS06135at 1308.861 kb on + strand, within ABZR87_RS06135at 1308.861 kb on + strand, within ABZR87_RS06135at 1308.862 kb on - strand, within ABZR87_RS06135at 1308.862 kb on - strand, within ABZR87_RS06135at 1308.862 kb on - strand, within ABZR87_RS06135at 1308.862 kb on - strand, within ABZR87_RS06135

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,306,183 + ABZR87_RS06120 0.16 +0.7
1,306,183 + ABZR87_RS06120 0.16 -0.7
1,306,184 - ABZR87_RS06120 0.16 +0.1
1,306,184 - ABZR87_RS06120 0.16 +0.4
1,306,277 - ABZR87_RS06120 0.26 -2.3
1,306,277 - ABZR87_RS06120 0.26 -0.3
1,306,391 - ABZR87_RS06120 0.38 +1.1
1,306,442 - ABZR87_RS06120 0.44 +1.0
1,306,453 + ABZR87_RS06120 0.45 +1.7
1,306,453 + ABZR87_RS06120 0.45 +1.1
1,306,453 + ABZR87_RS06120 0.45 +0.1
1,306,454 - ABZR87_RS06120 0.45 -0.6
1,306,613 - ABZR87_RS06120 0.62 -1.1
1,306,683 + ABZR87_RS06120 0.70 -1.2
1,306,683 + ABZR87_RS06120 0.70 +0.1
1,306,684 - ABZR87_RS06120 0.70 +0.3
1,306,684 - ABZR87_RS06120 0.70 +1.0
1,306,684 - ABZR87_RS06120 0.70 +0.8
1,306,684 - ABZR87_RS06120 0.70 +0.9
1,306,684 - ABZR87_RS06120 0.70 -1.4
1,306,684 - ABZR87_RS06120 0.70 +0.9
1,306,768 + ABZR87_RS06120 0.79 -0.5
1,306,768 + ABZR87_RS06120 0.79 +1.4
1,306,768 + ABZR87_RS06120 0.79 -0.9
1,306,769 - ABZR87_RS06120 0.79 +0.2
1,306,769 - ABZR87_RS06120 0.79 +0.6
1,306,769 - ABZR87_RS06120 0.79 +0.1
1,306,769 - ABZR87_RS06120 0.79 -1.4
1,306,771 + ABZR87_RS06120 0.79 -0.7
1,306,771 + ABZR87_RS06120 0.79 +0.5
1,306,771 + ABZR87_RS06120 0.79 -0.0
1,306,771 + ABZR87_RS06120 0.79 -0.6
1,306,771 + ABZR87_RS06120 0.79 -0.9
1,306,771 + ABZR87_RS06120 0.79 +0.2
1,306,771 + ABZR87_RS06120 0.79 -0.0
1,306,772 - ABZR87_RS06120 0.79 -0.5
1,306,772 - ABZR87_RS06120 0.79 -1.9
1,306,772 - ABZR87_RS06120 0.79 -2.0
1,306,772 - ABZR87_RS06120 0.79 +0.2
1,306,772 - ABZR87_RS06120 0.79 -2.6
1,306,836 - ABZR87_RS06120 0.86 -0.3
1,307,017 - +0.3
1,307,081 + -1.9
1,307,130 + +0.5
1,307,130 + -2.0
1,307,130 + -0.8
1,307,130 + -0.1
1,307,130 + +1.7
1,307,130 + +1.7
1,307,130 + -0.1
1,307,131 - +0.7
1,307,131 - -0.1
1,307,248 + ABZR87_RS06125 0.11 +0.8
1,307,248 + ABZR87_RS06125 0.11 -0.3
1,307,249 - ABZR87_RS06125 0.12 +0.1
1,307,249 - ABZR87_RS06125 0.12 +0.9
1,307,378 + ABZR87_RS06125 0.27 -0.9
1,307,378 + ABZR87_RS06125 0.27 -0.3
1,307,378 + ABZR87_RS06125 0.27 +0.5
1,307,891 + ABZR87_RS06125 0.87 +0.2
1,307,891 + ABZR87_RS06125 0.87 +1.2
1,307,891 + ABZR87_RS06125 0.87 +0.4
1,307,892 - ABZR87_RS06125 0.87 -1.2
1,307,892 - ABZR87_RS06125 0.87 -2.3
1,307,892 - ABZR87_RS06125 0.87 +0.7
1,307,892 - ABZR87_RS06125 0.87 +1.1
1,307,916 - ABZR87_RS06125 0.90 +0.3
1,307,988 - -0.5
1,307,988 - -0.3
1,307,988 - +1.1
1,307,988 - -0.1
1,307,994 - -0.2
1,308,043 + -1.7
1,308,043 + +2.7
1,308,043 + +0.3
1,308,043 + -0.4
1,308,043 + +0.9
1,308,043 + +0.2
1,308,043 + +0.4
1,308,043 + -1.3
1,308,043 + -2.9
1,308,044 - +2.2
1,308,044 - +0.8
1,308,044 - -0.6
1,308,044 - -0.1
1,308,045 + -0.3
1,308,045 + -2.1
1,308,045 + +0.9
1,308,045 + +1.0
1,308,045 + -0.2
1,308,045 + +1.1
1,308,045 + -1.5
1,308,046 - +1.2
1,308,046 - +0.6
1,308,046 - -0.1
1,308,046 - +0.9
1,308,046 - +0.6
1,308,046 - +0.4
1,308,046 - +0.2
1,308,046 - +0.7
1,308,046 - -0.2
1,308,046 - +2.0
1,308,046 - +0.9
1,308,049 + +0.4
1,308,049 + +0.7
1,308,049 + +0.5
1,308,049 + -0.1
1,308,050 - -0.4
1,308,050 - +1.0
1,308,050 - -0.9
1,308,050 - +0.9
1,308,050 - +0.3
1,308,103 + ABZR87_RS06130 0.16 +0.2
1,308,103 + ABZR87_RS06130 0.16 -0.8
1,308,104 - ABZR87_RS06130 0.16 +0.2
1,308,104 - ABZR87_RS06130 0.16 -2.4
1,308,112 + ABZR87_RS06130 0.18 -0.0
1,308,217 + ABZR87_RS06130 0.43 -0.7
1,308,217 + ABZR87_RS06130 0.43 -0.6
1,308,438 + +0.2
1,308,449 - -0.3
1,308,460 + -0.4
1,308,460 + -0.2
1,308,604 - -0.9
1,308,861 + ABZR87_RS06135 0.31 -0.5
1,308,861 + ABZR87_RS06135 0.31 +0.7
1,308,861 + ABZR87_RS06135 0.31 -0.6
1,308,861 + ABZR87_RS06135 0.31 -0.9
1,308,862 - ABZR87_RS06135 0.31 -0.0
1,308,862 - ABZR87_RS06135 0.31 +0.3
1,308,862 - ABZR87_RS06135 0.31 -1.0
1,308,862 - ABZR87_RS06135 0.31 +0.4

Or see this region's nucleotide sequence