Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04111 and SMc04110 are separated by 56 nucleotides SMc04110 and SMc04109 are separated by 22 nucleotides
SMc04111: SMc04111 - pilus assembly transmembrane protein, at 162,451 to 163,986
SMc04111
SMc04110: SMc04110 - hypothetical protein, at 164,043 to 164,723
SMc04110
SMc04109: SMc04109 - response regulator protein, at 164,746 to 166,032
SMc04109
Position (kb) 164
165 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 163.134 kb on - strand, within SMc04111 at 163.279 kb on + strand, within SMc04111 at 163.280 kb on - strand, within SMc04111 at 163.282 kb on - strand, within SMc04111 at 163.366 kb on + strand, within SMc04111 at 163.366 kb on + strand, within SMc04111 at 163.367 kb on - strand, within SMc04111 at 163.367 kb on - strand, within SMc04111 at 163.440 kb on - strand, within SMc04111 at 163.465 kb on + strand, within SMc04111 at 163.552 kb on + strand, within SMc04111 at 163.553 kb on - strand, within SMc04111 at 163.553 kb on - strand, within SMc04111 at 163.918 kb on + strand at 163.918 kb on + strand at 163.918 kb on + strand at 163.919 kb on - strand at 163.979 kb on - strand at 164.079 kb on + strand at 164.154 kb on + strand, within SMc04110 at 164.277 kb on + strand, within SMc04110 at 164.392 kb on + strand, within SMc04110 at 164.421 kb on + strand, within SMc04110 at 164.421 kb on + strand, within SMc04110 at 164.422 kb on - strand, within SMc04110 at 164.422 kb on - strand, within SMc04110 at 164.466 kb on + strand, within SMc04110 at 164.467 kb on - strand, within SMc04110 at 164.467 kb on - strand, within SMc04110 at 164.467 kb on - strand, within SMc04110 at 164.467 kb on - strand, within SMc04110 at 164.467 kb on - strand, within SMc04110 at 164.548 kb on - strand, within SMc04110 at 164.548 kb on - strand, within SMc04110 at 164.548 kb on - strand, within SMc04110 at 164.548 kb on - strand, within SMc04110 at 164.550 kb on + strand, within SMc04110 at 164.550 kb on + strand, within SMc04110 at 164.762 kb on - strand at 164.762 kb on - strand at 164.762 kb on - strand at 164.973 kb on + strand, within SMc04109 at 164.973 kb on + strand, within SMc04109 at 164.973 kb on + strand, within SMc04109 at 165.157 kb on + strand, within SMc04109 at 165.159 kb on + strand, within SMc04109 at 165.159 kb on + strand, within SMc04109 at 165.159 kb on + strand, within SMc04109 at 165.160 kb on - strand, within SMc04109 at 165.160 kb on - strand, within SMc04109 at 165.186 kb on + strand, within SMc04109
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 163,134 - SMc04111 0.44 -0.1 163,279 + SMc04111 0.54 +2.9 163,280 - SMc04111 0.54 +0.3 163,282 - SMc04111 0.54 -0.8 163,366 + SMc04111 0.60 +0.2 163,366 + SMc04111 0.60 -0.3 163,367 - SMc04111 0.60 -0.5 163,367 - SMc04111 0.60 -0.5 163,440 - SMc04111 0.64 +0.6 163,465 + SMc04111 0.66 -0.1 163,552 + SMc04111 0.72 -0.1 163,553 - SMc04111 0.72 +0.5 163,553 - SMc04111 0.72 +0.0 163,918 + -0.1 163,918 + -1.0 163,918 + -0.3 163,919 - -2.1 163,979 - +1.1 164,079 + -0.0 164,154 + SMc04110 0.16 -0.1 164,277 + SMc04110 0.34 -0.4 164,392 + SMc04110 0.51 -0.2 164,421 + SMc04110 0.56 -0.0 164,421 + SMc04110 0.56 -1.5 164,422 - SMc04110 0.56 -1.4 164,422 - SMc04110 0.56 -0.4 164,466 + SMc04110 0.62 +0.6 164,467 - SMc04110 0.62 -0.6 164,467 - SMc04110 0.62 -1.3 164,467 - SMc04110 0.62 +0.3 164,467 - SMc04110 0.62 -0.1 164,467 - SMc04110 0.62 -0.2 164,548 - SMc04110 0.74 -0.1 164,548 - SMc04110 0.74 -0.2 164,548 - SMc04110 0.74 -0.2 164,548 - SMc04110 0.74 +0.9 164,550 + SMc04110 0.74 +1.2 164,550 + SMc04110 0.74 -1.0 164,762 - +0.4 164,762 - -0.8 164,762 - +0.6 164,973 + SMc04109 0.18 -0.1 164,973 + SMc04109 0.18 -0.1 164,973 + SMc04109 0.18 -0.3 165,157 + SMc04109 0.32 -0.1 165,159 + SMc04109 0.32 -0.4 165,159 + SMc04109 0.32 +0.4 165,159 + SMc04109 0.32 +0.1 165,160 - SMc04109 0.32 -0.3 165,160 - SMc04109 0.32 -0.6 165,186 + SMc04109 0.34 +0.1
Or see this region's nucleotide sequence