Strain Fitness in Sinorhizobium meliloti 1021 around SMc02889

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02888 and SMc02889 are separated by 117 nucleotidesSMc02889 and SMc02890 overlap by 4 nucleotides SMc02888: SMc02888 - transcriptional regulator, at 243,152 to 244,174 SMc02888 SMc02889: SMc02889 - transporter, at 244,292 to 245,557 SMc02889 SMc02890: SMc02890 - outer membrane receptor protein, at 245,554 to 247,554 SMc02890 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1 2 3at 243.293 kb on + strand, within SMc02888at 243.293 kb on + strand, within SMc02888at 243.294 kb on - strand, within SMc02888at 243.294 kb on - strand, within SMc02888at 243.370 kb on - strand, within SMc02888at 243.370 kb on - strand, within SMc02888at 243.370 kb on - strand, within SMc02888at 243.484 kb on + strand, within SMc02888at 243.675 kb on - strand, within SMc02888at 243.675 kb on - strand, within SMc02888at 243.829 kb on - strand, within SMc02888at 243.864 kb on + strand, within SMc02888at 243.864 kb on + strand, within SMc02888at 243.864 kb on + strand, within SMc02888at 243.864 kb on + strand, within SMc02888at 243.865 kb on - strand, within SMc02888at 243.865 kb on - strand, within SMc02888at 243.865 kb on - strand, within SMc02888at 243.883 kb on - strand, within SMc02888at 244.200 kb on + strandat 244.201 kb on - strandat 244.331 kb on + strandat 244.362 kb on - strandat 244.362 kb on - strandat 244.362 kb on - strandat 244.424 kb on - strand, within SMc02889at 244.467 kb on + strand, within SMc02889at 244.784 kb on + strand, within SMc02889at 244.784 kb on + strand, within SMc02889at 244.784 kb on + strand, within SMc02889at 244.784 kb on + strand, within SMc02889at 244.785 kb on - strand, within SMc02889at 244.785 kb on - strand, within SMc02889at 244.785 kb on - strand, within SMc02889at 244.785 kb on - strand, within SMc02889at 244.785 kb on - strand, within SMc02889at 244.790 kb on + strand, within SMc02889at 244.843 kb on + strand, within SMc02889at 244.843 kb on + strand, within SMc02889at 244.844 kb on - strand, within SMc02889at 244.844 kb on - strand, within SMc02889at 244.870 kb on + strand, within SMc02889at 244.870 kb on + strand, within SMc02889at 244.871 kb on - strand, within SMc02889at 244.961 kb on - strand, within SMc02889at 244.961 kb on - strand, within SMc02889at 244.967 kb on + strand, within SMc02889at 244.967 kb on + strand, within SMc02889at 244.980 kb on + strand, within SMc02889at 244.981 kb on - strand, within SMc02889at 245.280 kb on - strand, within SMc02889at 245.661 kb on + strandat 245.662 kb on - strandat 245.662 kb on - strandat 245.662 kb on - strandat 245.664 kb on + strandat 245.826 kb on + strand, within SMc02890at 245.826 kb on + strand, within SMc02890at 245.827 kb on - strand, within SMc02890at 245.827 kb on - strand, within SMc02890at 245.827 kb on - strand, within SMc02890at 245.863 kb on + strand, within SMc02890at 245.864 kb on - strand, within SMc02890at 245.864 kb on - strand, within SMc02890at 245.866 kb on + strand, within SMc02890at 245.866 kb on + strand, within SMc02890at 245.866 kb on + strand, within SMc02890at 245.866 kb on + strand, within SMc02890at 245.867 kb on - strand, within SMc02890at 245.867 kb on - strand, within SMc02890at 245.867 kb on - strand, within SMc02890at 245.888 kb on - strand, within SMc02890at 245.888 kb on - strand, within SMc02890at 245.888 kb on - strand, within SMc02890at 245.888 kb on - strand, within SMc02890at 245.986 kb on + strand, within SMc02890at 245.986 kb on + strand, within SMc02890at 245.986 kb on + strand, within SMc02890at 245.986 kb on + strand, within SMc02890at 245.987 kb on - strand, within SMc02890at 245.987 kb on - strand, within SMc02890at 245.987 kb on - strand, within SMc02890at 246.108 kb on + strand, within SMc02890at 246.108 kb on + strand, within SMc02890at 246.108 kb on + strand, within SMc02890at 246.108 kb on + strand, within SMc02890at 246.131 kb on + strand, within SMc02890at 246.131 kb on + strand, within SMc02890at 246.133 kb on + strand, within SMc02890at 246.133 kb on + strand, within SMc02890at 246.133 kb on + strand, within SMc02890at 246.133 kb on + strand, within SMc02890at 246.134 kb on - strand, within SMc02890at 246.134 kb on - strand, within SMc02890at 246.134 kb on - strand, within SMc02890at 246.134 kb on - strand, within SMc02890at 246.134 kb on - strand, within SMc02890at 246.134 kb on - strand, within SMc02890at 246.135 kb on - strand, within SMc02890at 246.175 kb on + strand, within SMc02890at 246.175 kb on + strand, within SMc02890at 246.175 kb on + strand, within SMc02890at 246.176 kb on - strand, within SMc02890at 246.176 kb on - strand, within SMc02890at 246.176 kb on - strand, within SMc02890at 246.176 kb on - strand, within SMc02890at 246.182 kb on + strand, within SMc02890at 246.183 kb on - strand, within SMc02890at 246.183 kb on - strand, within SMc02890at 246.451 kb on + strand, within SMc02890at 246.462 kb on + strand, within SMc02890at 246.463 kb on - strand, within SMc02890

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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243,293 + SMc02888 0.14 +0.0
243,293 + SMc02888 0.14 +0.1
243,294 - SMc02888 0.14 -0.7
243,294 - SMc02888 0.14 -0.2
243,370 - SMc02888 0.21 -0.8
243,370 - SMc02888 0.21 -0.6
243,370 - SMc02888 0.21 +0.6
243,484 + SMc02888 0.32 +0.7
243,675 - SMc02888 0.51 -0.2
243,675 - SMc02888 0.51 +0.1
243,829 - SMc02888 0.66 +1.0
243,864 + SMc02888 0.70 +0.3
243,864 + SMc02888 0.70 -0.8
243,864 + SMc02888 0.70 +0.6
243,864 + SMc02888 0.70 -0.1
243,865 - SMc02888 0.70 -0.2
243,865 - SMc02888 0.70 +0.0
243,865 - SMc02888 0.70 -0.1
243,883 - SMc02888 0.71 -0.5
244,200 + +0.3
244,201 - +0.4
244,331 + +1.6
244,362 - +1.2
244,362 - -0.1
244,362 - +0.8
244,424 - SMc02889 0.10 -0.1
244,467 + SMc02889 0.14 -0.4
244,784 + SMc02889 0.39 -1.6
244,784 + SMc02889 0.39 +2.3
244,784 + SMc02889 0.39 +0.0
244,784 + SMc02889 0.39 +0.9
244,785 - SMc02889 0.39 +0.5
244,785 - SMc02889 0.39 +0.7
244,785 - SMc02889 0.39 -1.2
244,785 - SMc02889 0.39 +1.4
244,785 - SMc02889 0.39 +1.5
244,790 + SMc02889 0.39 -0.0
244,843 + SMc02889 0.44 +0.4
244,843 + SMc02889 0.44 -0.4
244,844 - SMc02889 0.44 +1.1
244,844 - SMc02889 0.44 -0.5
244,870 + SMc02889 0.46 +0.9
244,870 + SMc02889 0.46 +0.6
244,871 - SMc02889 0.46 -0.5
244,961 - SMc02889 0.53 +0.3
244,961 - SMc02889 0.53 -0.3
244,967 + SMc02889 0.53 +0.8
244,967 + SMc02889 0.53 -0.5
244,980 + SMc02889 0.54 -0.2
244,981 - SMc02889 0.54 -0.6
245,280 - SMc02889 0.78 +0.2
245,661 + -0.2
245,662 - -0.5
245,662 - +1.4
245,662 - -1.3
245,664 + +0.0
245,826 + SMc02890 0.14 +0.0
245,826 + SMc02890 0.14 -0.6
245,827 - SMc02890 0.14 -0.3
245,827 - SMc02890 0.14 +0.4
245,827 - SMc02890 0.14 +0.0
245,863 + SMc02890 0.15 +0.1
245,864 - SMc02890 0.15 +0.2
245,864 - SMc02890 0.15 -1.1
245,866 + SMc02890 0.16 +3.1
245,866 + SMc02890 0.16 +0.2
245,866 + SMc02890 0.16 +0.3
245,866 + SMc02890 0.16 +0.4
245,867 - SMc02890 0.16 +1.3
245,867 - SMc02890 0.16 +1.4
245,867 - SMc02890 0.16 -1.0
245,888 - SMc02890 0.17 +0.4
245,888 - SMc02890 0.17 -0.6
245,888 - SMc02890 0.17 -0.2
245,888 - SMc02890 0.17 +0.3
245,986 + SMc02890 0.22 +0.2
245,986 + SMc02890 0.22 -0.3
245,986 + SMc02890 0.22 -0.5
245,986 + SMc02890 0.22 -0.0
245,987 - SMc02890 0.22 +0.2
245,987 - SMc02890 0.22 +0.5
245,987 - SMc02890 0.22 +0.2
246,108 + SMc02890 0.28 -0.2
246,108 + SMc02890 0.28 -0.2
246,108 + SMc02890 0.28 +0.3
246,108 + SMc02890 0.28 -0.8
246,131 + SMc02890 0.29 -1.3
246,131 + SMc02890 0.29 +0.4
246,133 + SMc02890 0.29 -0.6
246,133 + SMc02890 0.29 -0.0
246,133 + SMc02890 0.29 +0.5
246,133 + SMc02890 0.29 -2.1
246,134 - SMc02890 0.29 +0.2
246,134 - SMc02890 0.29 +0.5
246,134 - SMc02890 0.29 -0.3
246,134 - SMc02890 0.29 +0.6
246,134 - SMc02890 0.29 -0.2
246,134 - SMc02890 0.29 -0.2
246,135 - SMc02890 0.29 +0.3
246,175 + SMc02890 0.31 -0.8
246,175 + SMc02890 0.31 +0.8
246,175 + SMc02890 0.31 -0.4
246,176 - SMc02890 0.31 -0.7
246,176 - SMc02890 0.31 +0.8
246,176 - SMc02890 0.31 +0.5
246,176 - SMc02890 0.31 +0.2
246,182 + SMc02890 0.31 +1.0
246,183 - SMc02890 0.31 +0.6
246,183 - SMc02890 0.31 -0.0
246,451 + SMc02890 0.45 -0.3
246,462 + SMc02890 0.45 -1.1
246,463 - SMc02890 0.45 -0.2

Or see this region's nucleotide sequence