Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02879 and SMc02880 overlap by 4 nucleotides SMc02880 and SMc02881 overlap by 4 nucleotides SMc02881 and SMc02882 are separated by 385 nucleotides
SMc02879: SMc02879 - hypothetical protein, at 235,533 to 236,270
SMc02879
SMc02880: SMc02880 - hypothetical protein, at 236,267 to 237,178
SMc02880
SMc02881: SMc02881 - hypothetical protein, at 237,175 to 238,536
SMc02881
SMc02882: SMc02882 - CysZ-like protein, at 238,922 to 239,656
SMc02882
Position (kb) 237
238
239 Strain fitness (log2 ratio) -1
0
1
2 at 236.259 kb on + strand at 236.259 kb on + strand at 236.673 kb on - strand, within SMc02880 at 237.340 kb on - strand, within SMc02881 at 237.509 kb on + strand, within SMc02881 at 237.509 kb on + strand, within SMc02881 at 237.611 kb on + strand, within SMc02881 at 237.612 kb on - strand, within SMc02881 at 237.649 kb on - strand, within SMc02881 at 237.941 kb on + strand, within SMc02881 at 238.127 kb on + strand, within SMc02881 at 238.170 kb on + strand, within SMc02881 at 238.170 kb on + strand, within SMc02881 at 238.171 kb on - strand, within SMc02881 at 238.171 kb on - strand, within SMc02881 at 238.589 kb on - strand at 238.605 kb on - strand at 238.707 kb on + strand at 238.708 kb on - strand at 238.756 kb on - strand at 238.783 kb on + strand at 238.881 kb on + strand at 238.881 kb on + strand at 238.881 kb on + strand at 238.882 kb on + strand at 238.882 kb on - strand at 238.882 kb on - strand at 239.405 kb on + strand, within SMc02882
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 236,259 + -0.5 236,259 + -0.2 236,673 - SMc02880 0.45 +0.4 237,340 - SMc02881 0.12 +0.1 237,509 + SMc02881 0.25 +0.4 237,509 + SMc02881 0.25 -0.4 237,611 + SMc02881 0.32 -0.3 237,612 - SMc02881 0.32 -0.2 237,649 - SMc02881 0.35 -0.3 237,941 + SMc02881 0.56 -0.3 238,127 + SMc02881 0.70 +0.3 238,170 + SMc02881 0.73 -1.1 238,170 + SMc02881 0.73 +0.2 238,171 - SMc02881 0.73 +0.3 238,171 - SMc02881 0.73 +1.0 238,589 - +0.0 238,605 - -0.2 238,707 + +1.8 238,708 - -0.2 238,756 - +0.5 238,783 + +1.5 238,881 + -0.2 238,881 + -0.7 238,881 + +0.2 238,882 + -0.4 238,882 - +1.0 238,882 - +0.4 239,405 + SMc02882 0.66 -1.0
Or see this region's nucleotide sequence