Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02820 and SMc02821 are separated by 58 nucleotides SMc02821 and SMc02822 are separated by 7 nucleotides
SMc02820: SMc02820 - pilus assembly protein, at 166,163 to 167,563
SMc02820
SMc02821: SMc02821 - hypothetical protein, at 167,622 to 168,632
SMc02821
SMc02822: SMc02822 - hypothetical protein, at 168,640 to 169,623
SMc02822
Position (kb) 167
168
169 Strain fitness (log2 ratio) -1
0
1
2 at 166.657 kb on - strand, within SMc02820 at 166.938 kb on - strand, within SMc02820 at 166.940 kb on - strand, within SMc02820 at 166.963 kb on + strand, within SMc02820 at 167.253 kb on - strand, within SMc02820 at 167.254 kb on + strand, within SMc02820 at 167.255 kb on - strand, within SMc02820 at 167.255 kb on - strand, within SMc02820 at 167.561 kb on + strand at 167.561 kb on + strand at 167.570 kb on - strand at 167.632 kb on + strand at 167.633 kb on - strand at 167.691 kb on + strand at 167.692 kb on - strand at 167.692 kb on - strand at 167.950 kb on - strand, within SMc02821 at 168.462 kb on - strand, within SMc02821 at 168.462 kb on - strand, within SMc02821 at 168.462 kb on - strand, within SMc02821 at 168.462 kb on - strand, within SMc02821 at 168.501 kb on + strand, within SMc02821 at 168.502 kb on - strand, within SMc02821 at 168.654 kb on - strand at 169.042 kb on + strand, within SMc02822 at 169.043 kb on - strand, within SMc02822 at 169.043 kb on - strand, within SMc02822 at 169.114 kb on + strand, within SMc02822 at 169.275 kb on - strand, within SMc02822 at 169.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 166,657 - SMc02820 0.35 -0.9 166,938 - SMc02820 0.55 -0.1 166,940 - SMc02820 0.55 -0.1 166,963 + SMc02820 0.57 +1.1 167,253 - SMc02820 0.78 -0.2 167,254 + SMc02820 0.78 +0.9 167,255 - SMc02820 0.78 -1.0 167,255 - SMc02820 0.78 +0.4 167,561 + -0.4 167,561 + +0.6 167,570 - -0.0 167,632 + -0.1 167,633 - -1.0 167,691 + +1.0 167,692 - +2.3 167,692 - -1.5 167,950 - SMc02821 0.32 +0.3 168,462 - SMc02821 0.83 +0.5 168,462 - SMc02821 0.83 +0.4 168,462 - SMc02821 0.83 +0.1 168,462 - SMc02821 0.83 +0.0 168,501 + SMc02821 0.87 +0.7 168,502 - SMc02821 0.87 +0.4 168,654 - -0.2 169,042 + SMc02822 0.41 +0.6 169,043 - SMc02822 0.41 -0.8 169,043 - SMc02822 0.41 +0.1 169,114 + SMc02822 0.48 +1.9 169,275 - SMc02822 0.65 -0.6 169,602 - -0.1
Or see this region's nucleotide sequence