Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02249 and SMc02250 are separated by 219 nucleotides SMc02250 and SMc02251 are separated by 133 nucleotides SMc02251 and SMc02252 are separated by 180 nucleotides
SMc02249: SMc02249 - sensory transduction histidine kinase transmembrane protein, at 611,472 to 614,978
SMc02249
SMc02250: SMc02250 - large-conductance mechanosensitive channel, at 615,198 to 615,626
SMc02250
SMc02251: SMc02251 - aspartate aminotransferase, at 615,760 to 616,926
SMc02251
SMc02252: SMc02252 - UDP-glucose 4-epimerase, at 617,107 to 618,135
SMc02252
Position (kb) 615
616
617 Strain fitness (log2 ratio) -1
0
1
2 at 614.812 kb on + strand at 614.812 kb on + strand at 614.812 kb on + strand at 614.813 kb on - strand at 614.830 kb on + strand at 614.831 kb on - strand at 614.831 kb on - strand at 615.002 kb on + strand at 615.002 kb on + strand at 615.024 kb on - strand at 615.046 kb on + strand at 615.047 kb on - strand at 615.098 kb on + strand at 615.098 kb on + strand at 615.279 kb on - strand, within SMc02250 at 615.363 kb on + strand, within SMc02250 at 615.363 kb on + strand, within SMc02250 at 615.364 kb on - strand, within SMc02250 at 615.439 kb on - strand, within SMc02250 at 615.439 kb on - strand, within SMc02250 at 615.832 kb on + strand at 615.833 kb on - strand at 615.833 kb on - strand at 615.833 kb on - strand at 615.946 kb on + strand, within SMc02251 at 615.946 kb on + strand, within SMc02251 at 616.040 kb on - strand, within SMc02251 at 616.040 kb on - strand, within SMc02251 at 616.045 kb on - strand, within SMc02251 at 616.376 kb on - strand, within SMc02251 at 616.388 kb on - strand, within SMc02251 at 616.552 kb on + strand, within SMc02251 at 616.553 kb on - strand, within SMc02251 at 616.662 kb on + strand, within SMc02251 at 616.663 kb on - strand, within SMc02251 at 616.909 kb on + strand at 616.910 kb on - strand at 617.084 kb on + strand at 617.137 kb on + strand at 617.137 kb on + strand at 617.138 kb on - strand at 617.140 kb on - strand at 617.140 kb on - strand at 617.140 kb on - strand at 617.140 kb on - strand at 617.140 kb on - strand at 617.248 kb on + strand, within SMc02252 at 617.372 kb on - strand, within SMc02252 at 617.374 kb on + strand, within SMc02252 at 617.468 kb on - strand at 617.743 kb on + strand, within SMc02252 at 617.776 kb on + strand, within SMc02252 at 617.776 kb on + strand, within SMc02252 at 617.776 kb on + strand, within SMc02252 at 617.777 kb on - strand, within SMc02252 at 617.777 kb on - strand, within SMc02252 at 617.778 kb on + strand, within SMc02252 at 617.779 kb on - strand, within SMc02252 at 617.824 kb on + strand, within SMc02252 at 617.824 kb on + strand, within SMc02252 at 617.824 kb on + strand, within SMc02252 at 617.824 kb on + strand, within SMc02252 at 617.828 kb on + strand, within SMc02252 at 617.829 kb on - strand, within SMc02252
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 614,812 + -0.1 614,812 + +1.0 614,812 + -0.9 614,813 - -0.2 614,830 + -0.4 614,831 - +0.3 614,831 - +0.7 615,002 + -0.2 615,002 + +0.1 615,024 - -1.3 615,046 + +0.7 615,047 - -0.0 615,098 + -0.9 615,098 + -0.3 615,279 - SMc02250 0.19 -0.6 615,363 + SMc02250 0.38 +0.8 615,363 + SMc02250 0.38 +0.3 615,364 - SMc02250 0.39 +1.8 615,439 - SMc02250 0.56 -1.1 615,439 - SMc02250 0.56 -0.8 615,832 + -1.0 615,833 - -0.2 615,833 - -0.5 615,833 - +0.6 615,946 + SMc02251 0.16 +1.2 615,946 + SMc02251 0.16 +0.6 616,040 - SMc02251 0.24 -0.1 616,040 - SMc02251 0.24 -1.0 616,045 - SMc02251 0.24 +0.0 616,376 - SMc02251 0.53 +0.1 616,388 - SMc02251 0.54 +0.3 616,552 + SMc02251 0.68 +1.2 616,553 - SMc02251 0.68 +0.6 616,662 + SMc02251 0.77 -0.2 616,663 - SMc02251 0.77 -0.1 616,909 + +0.3 616,910 - +1.3 617,084 + +0.2 617,137 + +0.6 617,137 + +0.0 617,138 - +1.6 617,140 - -0.0 617,140 - -0.4 617,140 - -0.5 617,140 - -0.2 617,140 - +0.5 617,248 + SMc02252 0.14 +0.3 617,372 - SMc02252 0.26 +1.4 617,374 + SMc02252 0.26 -0.2 617,468 - -0.2 617,743 + SMc02252 0.62 +0.6 617,776 + SMc02252 0.65 +0.2 617,776 + SMc02252 0.65 -0.1 617,776 + SMc02252 0.65 +0.5 617,777 - SMc02252 0.65 +0.3 617,777 - SMc02252 0.65 -0.7 617,778 + SMc02252 0.65 -1.2 617,779 - SMc02252 0.65 -1.2 617,824 + SMc02252 0.70 -0.2 617,824 + SMc02252 0.70 +2.4 617,824 + SMc02252 0.70 +1.1 617,824 + SMc02252 0.70 -0.5 617,828 + SMc02252 0.70 -0.7 617,829 - SMc02252 0.70 -0.3
Or see this region's nucleotide sequence