Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02151 and SMc02183 are separated by 829 nucleotides SMc02183 and SMc02150 are separated by 76 nucleotides SMc02150 and SMc02149 are separated by 392 nucleotides
SMc02151: SMc02151 - hypothetical protein, at 560,247 to 560,579
SMc02151
SMc02183: SMc02183 - tRNA-Thr, at 561,409 to 561,484
SMc02183
SMc02150: SMc02150 - hypothetical protein, at 561,561 to 562,571
SMc02150
SMc02149: SMc02149 - hypothetical protein, at 562,964 to 564,124
SMc02149
Position (kb) 561
562
563 Strain fitness (log2 ratio) -1
0
1
2
3 at 560.655 kb on + strand at 560.673 kb on + strand at 560.750 kb on - strand at 560.768 kb on + strand at 560.770 kb on + strand at 560.771 kb on - strand at 560.783 kb on + strand at 560.799 kb on - strand at 560.886 kb on + strand at 560.887 kb on - strand at 560.887 kb on - strand at 560.899 kb on + strand at 560.900 kb on - strand at 561.004 kb on + strand at 561.004 kb on + strand at 561.005 kb on - strand at 561.079 kb on + strand at 561.079 kb on + strand at 561.079 kb on + strand at 561.080 kb on - strand at 561.210 kb on + strand at 561.211 kb on - strand at 561.231 kb on + strand at 561.232 kb on - strand at 561.232 kb on - strand at 561.299 kb on - strand at 561.341 kb on - strand at 561.378 kb on - strand at 561.401 kb on - strand at 561.644 kb on - strand at 561.702 kb on + strand, within SMc02150 at 561.833 kb on + strand, within SMc02150 at 561.833 kb on + strand, within SMc02150 at 561.834 kb on - strand, within SMc02150 at 561.838 kb on + strand, within SMc02150 at 561.838 kb on + strand, within SMc02150 at 561.838 kb on + strand, within SMc02150 at 561.863 kb on - strand, within SMc02150 at 561.863 kb on - strand, within SMc02150 at 561.963 kb on - strand, within SMc02150 at 561.964 kb on + strand, within SMc02150 at 561.964 kb on + strand, within SMc02150 at 561.965 kb on - strand, within SMc02150 at 561.965 kb on - strand, within SMc02150 at 561.965 kb on - strand, within SMc02150 at 561.965 kb on - strand, within SMc02150 at 561.965 kb on - strand, within SMc02150 at 562.059 kb on + strand, within SMc02150 at 562.204 kb on + strand, within SMc02150 at 562.204 kb on + strand, within SMc02150 at 562.270 kb on + strand, within SMc02150 at 562.271 kb on - strand, within SMc02150 at 562.271 kb on - strand, within SMc02150 at 562.524 kb on + strand at 562.580 kb on + strand at 562.725 kb on - strand at 562.725 kb on - strand at 562.781 kb on + strand at 562.781 kb on + strand at 562.858 kb on - strand at 563.238 kb on + strand, within SMc02149 at 563.239 kb on - strand, within SMc02149
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 560,655 + -0.6 560,673 + +0.3 560,750 - -0.1 560,768 + +0.4 560,770 + -0.1 560,771 - +1.4 560,783 + +3.4 560,799 - -0.3 560,886 + -1.3 560,887 - -0.4 560,887 - +0.0 560,899 + +0.1 560,900 - +1.8 561,004 + +1.6 561,004 + -1.2 561,005 - +0.8 561,079 + +0.8 561,079 + +0.2 561,079 + -0.8 561,080 - -0.8 561,210 + -0.5 561,211 - +0.0 561,231 + -0.2 561,232 - -1.0 561,232 - +0.5 561,299 - +0.3 561,341 - -0.2 561,378 - -0.3 561,401 - +0.4 561,644 - +1.8 561,702 + SMc02150 0.14 -0.1 561,833 + SMc02150 0.27 -0.0 561,833 + SMc02150 0.27 -0.3 561,834 - SMc02150 0.27 +0.4 561,838 + SMc02150 0.27 +0.1 561,838 + SMc02150 0.27 +1.6 561,838 + SMc02150 0.27 +0.9 561,863 - SMc02150 0.30 -0.1 561,863 - SMc02150 0.30 -0.5 561,963 - SMc02150 0.40 +0.1 561,964 + SMc02150 0.40 -0.1 561,964 + SMc02150 0.40 -0.4 561,965 - SMc02150 0.40 -0.2 561,965 - SMc02150 0.40 +0.3 561,965 - SMc02150 0.40 +0.1 561,965 - SMc02150 0.40 -1.2 561,965 - SMc02150 0.40 -0.2 562,059 + SMc02150 0.49 +0.2 562,204 + SMc02150 0.64 +2.2 562,204 + SMc02150 0.64 +0.6 562,270 + SMc02150 0.70 -0.4 562,271 - SMc02150 0.70 +3.1 562,271 - SMc02150 0.70 +0.4 562,524 + -0.3 562,580 + -0.0 562,725 - -0.2 562,725 - +0.8 562,781 + +1.1 562,781 + +0.6 562,858 - +0.8 563,238 + SMc02149 0.24 +1.5 563,239 - SMc02149 0.24 +0.0
Or see this region's nucleotide sequence