Strain Fitness in Sinorhizobium meliloti 1021 around SMc02097

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02099 and SMc02098 are separated by 51 nucleotidesSMc02098 and SMc02097 are separated by 36 nucleotidesSMc02097 and SMc02096 overlap by 1 nucleotidesSMc02096 and SMc02095 are separated by 130 nucleotides SMc02099: SMc02099 - uridylate kinase, at 1,609,884 to 1,610,606 SMc02099 SMc02098: SMc02098 - ribosome recycling factor, at 1,610,658 to 1,611,218 SMc02098 SMc02097: SMc02097 - UDP pyrophosphate synthase, at 1,611,255 to 1,611,998 SMc02097 SMc02096: SMc02096 - phosphatidate cytidylyltransferase, at 1,611,998 to 1,612,831 SMc02096 SMc02095: SMc02095 - hypothetical protein, at 1,612,962 to 1,614,086 SMc02095 Position (kb) 1611 1612Strain fitness (log2 ratio) -1 0 1at 1612.845 kb on - strandat 1612.851 kb on + strandat 1612.851 kb on + strandat 1612.851 kb on + strandat 1612.852 kb on - strandat 1612.852 kb on - strandat 1612.852 kb on - strandat 1612.873 kb on + strandat 1612.874 kb on - strandat 1612.952 kb on - strandat 1612.961 kb on + strandat 1612.961 kb on + strandat 1612.962 kb on - strandat 1612.969 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,612,845 - +0.1
1,612,851 + -0.6
1,612,851 + -1.7
1,612,851 + +0.2
1,612,852 - -0.9
1,612,852 - -0.4
1,612,852 - +0.3
1,612,873 + -0.2
1,612,874 - -1.3
1,612,952 - -0.2
1,612,961 + +0.3
1,612,961 + -0.7
1,612,962 - -1.3
1,612,969 + -0.7

Or see this region's nucleotide sequence