Strain Fitness in Sinorhizobium meliloti 1021 around SMc02063

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02064 and SMc02063 are separated by 27 nucleotidesSMc02063 and SMc02062 are separated by 35 nucleotidesSMc02062 and SMc02061 are separated by 171 nucleotides SMc02064: SMc02064 - seryl-tRNA synthetase, at 1,653,130 to 1,654,413 SMc02064 SMc02063: SMc02063 - stationary phase survival protein SurE, at 1,654,441 to 1,655,211 SMc02063 SMc02062: SMc02062 - protein-L-isoaspartate O-methyltransferase, at 1,655,247 to 1,655,861 SMc02062 SMc02061: SMc02061 - biotin-regulated protein, at 1,656,033 to 1,656,686 SMc02061 Position (kb) 1654 1655 1656Strain fitness (log2 ratio) -1 0 1at 1654.748 kb on - strand, within SMc02063at 1655.355 kb on + strand, within SMc02062at 1655.859 kb on + strandat 1655.879 kb on - strandat 1655.923 kb on + strandat 1655.923 kb on + strandat 1655.923 kb on + strandat 1655.923 kb on + strandat 1655.923 kb on + strandat 1655.927 kb on + strandat 1656.032 kb on + strandat 1656.032 kb on + strandat 1656.032 kb on + strandat 1656.033 kb on - strandat 1656.033 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,654,748 - SMc02063 0.40 -0.3
1,655,355 + SMc02062 0.18 -1.0
1,655,859 + -0.1
1,655,879 - -0.7
1,655,923 + -0.0
1,655,923 + +0.4
1,655,923 + +0.1
1,655,923 + +0.1
1,655,923 + +0.3
1,655,927 + +0.8
1,656,032 + -0.4
1,656,032 + +0.2
1,656,032 + +0.3
1,656,033 - +0.5
1,656,033 - -0.5

Or see this region's nucleotide sequence