Strain Fitness in Sinorhizobium meliloti 1021 around SMc01915

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01913 and SMc01914 are separated by 17 nucleotidesSMc01914 and SMc01915 are separated by 56 nucleotidesSMc01915 and SMc01916 overlap by 1 nucleotidesSMc01916 and SMc01917 are separated by 16 nucleotides SMc01913: SMc01913 - NADH dehydrogenase subunit B, at 1,378,615 to 1,379,193 SMc01913 SMc01914: SMc01914 - NADH dehydrogenase subunit C, at 1,379,211 to 1,379,816 SMc01914 SMc01915: SMc01915 - NADH dehydrogenase subunit D, at 1,379,873 to 1,381,063 SMc01915 SMc01916: SMc01916 - signal peptide protein, at 1,381,063 to 1,381,317 SMc01916 SMc01917: SMc01917 - NADH dehydrogenase subunit E, at 1,381,334 to 1,382,161 SMc01917 Position (kb) 1379 1380 1381 1382Strain fitness (log2 ratio) -1 0 1at 1379.778 kb on + strandat 1379.819 kb on + strandat 1381.231 kb on + strand, within SMc01916at 1381.231 kb on + strand, within SMc01916at 1381.318 kb on + strandat 1381.318 kb on + strandat 1381.318 kb on + strandat 1381.901 kb on + strand, within SMc01917

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,379,778 + -0.6
1,379,819 + +0.3
1,381,231 + SMc01916 0.66 -1.2
1,381,231 + SMc01916 0.66 -0.8
1,381,318 + -0.6
1,381,318 + -0.6
1,381,318 + -0.0
1,381,901 + SMc01917 0.68 -1.2

Or see this region's nucleotide sequence