Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01716 and SMc01733 are separated by 119 nucleotides SMc01733 and SMc01715 are separated by 337 nucleotides SMc01715 and SMc01714 are separated by 192 nucleotides SMc01714 and SMc01713 are separated by 208 nucleotides
SMc01716: SMc01716 - sensor histidine kinase transmembrane protein, at 487,688 to 489,208
SMc01716
SMc01733: SMc01733 - tRNA-Arg, at 489,328 to 489,404
SMc01733
SMc01715: SMc01715 - hypothetical protein, at 489,742 to 490,437
SMc01715
SMc01714: SMc01714 - hypothetical protein, at 490,630 to 491,118
SMc01714
SMc01713: SMc01713 - hypothetical protein, at 491,327 to 491,944
SMc01713
Position (kb) 489
490
491 Strain fitness (log2 ratio) -2
-1
0
1
2 at 488.860 kb on + strand, within SMc01716 at 488.860 kb on + strand, within SMc01716 at 488.861 kb on - strand, within SMc01716 at 488.895 kb on - strand, within SMc01716 at 488.895 kb on - strand, within SMc01716 at 489.151 kb on - strand at 489.642 kb on - strand at 489.642 kb on - strand at 489.646 kb on + strand at 489.845 kb on + strand, within SMc01715 at 489.846 kb on - strand, within SMc01715 at 489.846 kb on - strand, within SMc01715 at 489.941 kb on + strand, within SMc01715 at 489.941 kb on + strand, within SMc01715 at 489.941 kb on + strand, within SMc01715 at 489.941 kb on + strand, within SMc01715 at 489.942 kb on - strand, within SMc01715 at 489.958 kb on + strand, within SMc01715 at 489.959 kb on - strand, within SMc01715 at 490.116 kb on + strand, within SMc01715 at 490.116 kb on + strand, within SMc01715 at 490.117 kb on - strand, within SMc01715 at 490.117 kb on - strand, within SMc01715 at 490.117 kb on - strand, within SMc01715 at 490.233 kb on - strand, within SMc01715 at 490.233 kb on - strand, within SMc01715 at 490.384 kb on + strand at 490.385 kb on - strand at 490.519 kb on + strand at 490.519 kb on + strand at 490.519 kb on + strand at 490.519 kb on + strand at 490.519 kb on + strand at 490.519 kb on + strand at 490.520 kb on - strand at 490.520 kb on - strand at 490.520 kb on - strand at 490.520 kb on - strand at 490.533 kb on + strand at 490.534 kb on - strand at 490.534 kb on - strand at 490.534 kb on - strand at 490.536 kb on + strand at 490.537 kb on - strand at 490.537 kb on - strand at 490.537 kb on - strand at 490.543 kb on + strand at 490.544 kb on - strand at 490.558 kb on - strand at 490.565 kb on + strand at 490.657 kb on - strand at 490.753 kb on + strand, within SMc01714 at 490.754 kb on - strand, within SMc01714 at 490.754 kb on - strand, within SMc01714 at 490.816 kb on + strand, within SMc01714 at 490.816 kb on + strand, within SMc01714 at 490.816 kb on + strand, within SMc01714 at 490.816 kb on + strand, within SMc01714 at 490.816 kb on + strand, within SMc01714 at 490.817 kb on - strand, within SMc01714 at 490.817 kb on - strand, within SMc01714 at 490.818 kb on + strand, within SMc01714 at 490.819 kb on - strand, within SMc01714 at 490.891 kb on + strand, within SMc01714 at 490.891 kb on + strand, within SMc01714 at 490.891 kb on + strand, within SMc01714 at 491.105 kb on + strand at 491.106 kb on - strand at 491.116 kb on + strand at 491.117 kb on - strand at 491.259 kb on + strand at 491.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 488,860 + SMc01716 0.77 +0.7 488,860 + SMc01716 0.77 +0.7 488,861 - SMc01716 0.77 +0.1 488,895 - SMc01716 0.79 -0.6 488,895 - SMc01716 0.79 +0.3 489,151 - +0.4 489,642 - -0.0 489,642 - +0.1 489,646 + +1.8 489,845 + SMc01715 0.15 +0.8 489,846 - SMc01715 0.15 +0.1 489,846 - SMc01715 0.15 -0.2 489,941 + SMc01715 0.29 +0.6 489,941 + SMc01715 0.29 +0.5 489,941 + SMc01715 0.29 +2.1 489,941 + SMc01715 0.29 -0.4 489,942 - SMc01715 0.29 +0.5 489,958 + SMc01715 0.31 +0.2 489,959 - SMc01715 0.31 +0.4 490,116 + SMc01715 0.54 -1.1 490,116 + SMc01715 0.54 -0.5 490,117 - SMc01715 0.54 +0.2 490,117 - SMc01715 0.54 -1.7 490,117 - SMc01715 0.54 -0.2 490,233 - SMc01715 0.71 +0.6 490,233 - SMc01715 0.71 +1.2 490,384 + +0.1 490,385 - -1.7 490,519 + +0.1 490,519 + +0.1 490,519 + -0.8 490,519 + +0.4 490,519 + +0.5 490,519 + -1.5 490,520 - -0.1 490,520 - +0.2 490,520 - +1.2 490,520 - +0.5 490,533 + -0.2 490,534 - -0.1 490,534 - +0.4 490,534 - -1.9 490,536 + +0.4 490,537 - +1.2 490,537 - -0.2 490,537 - -0.6 490,543 + +0.2 490,544 - +0.4 490,558 - +0.4 490,565 + -0.8 490,657 - -0.0 490,753 + SMc01714 0.25 -0.5 490,754 - SMc01714 0.25 +1.8 490,754 - SMc01714 0.25 -0.3 490,816 + SMc01714 0.38 -2.2 490,816 + SMc01714 0.38 -1.3 490,816 + SMc01714 0.38 +0.3 490,816 + SMc01714 0.38 -1.0 490,816 + SMc01714 0.38 +0.1 490,817 - SMc01714 0.38 -0.3 490,817 - SMc01714 0.38 +0.3 490,818 + SMc01714 0.38 +0.3 490,819 - SMc01714 0.39 -0.1 490,891 + SMc01714 0.53 +0.4 490,891 + SMc01714 0.53 -0.6 490,891 + SMc01714 0.53 -0.8 491,105 + -0.5 491,106 - +0.8 491,116 + +1.2 491,117 - -0.9 491,259 + -0.7 491,300 - -2.3
Or see this region's nucleotide sequence