Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00773 and SMc00838 are separated by 293 nucleotides SMc00838 and SMc00774 are separated by 184 nucleotides
SMc00773: SMc00773 - putrescine ABC transporter permease, at 786,531 to 787,352
SMc00773
SMc00838: SMc00838 - hypothetical protein, at 787,646 to 789,460
SMc00838
SMc00774: SMc00774 - Acetoacetate--CoA ligase (EC 6.2.1.16) <small>(from data)</small>, at 789,645 to 791,597
SMc00774
Position (kb) 787
788
789
790 Strain fitness (log2 ratio) -2
-1
0
1 at 786.796 kb on - strand, within SMc00773 at 786.837 kb on + strand, within SMc00773 at 786.837 kb on + strand, within SMc00773 at 786.837 kb on + strand, within SMc00773 at 786.838 kb on - strand, within SMc00773 at 786.838 kb on - strand, within SMc00773 at 786.838 kb on - strand, within SMc00773 at 786.838 kb on - strand, within SMc00773 at 786.941 kb on + strand, within SMc00773 at 787.191 kb on + strand, within SMc00773 at 787.191 kb on + strand, within SMc00773 at 787.191 kb on + strand, within SMc00773 at 787.192 kb on - strand, within SMc00773 at 787.192 kb on - strand, within SMc00773 at 787.384 kb on - strand at 787.384 kb on - strand at 787.640 kb on + strand at 787.641 kb on - strand at 787.641 kb on - strand at 788.227 kb on - strand, within SMc00838 at 788.590 kb on + strand, within SMc00838 at 788.807 kb on + strand, within SMc00838 at 788.807 kb on + strand, within SMc00838 at 788.808 kb on - strand, within SMc00838 at 788.823 kb on - strand, within SMc00838 at 788.977 kb on + strand, within SMc00838 at 788.978 kb on - strand, within SMc00838 at 789.364 kb on - strand at 789.387 kb on - strand at 789.387 kb on - strand at 789.450 kb on - strand at 789.462 kb on + strand at 789.529 kb on + strand at 789.529 kb on + strand at 789.529 kb on + strand at 789.530 kb on - strand at 789.615 kb on + strand at 789.685 kb on + strand at 789.686 kb on - strand at 789.686 kb on - strand at 789.756 kb on + strand at 789.756 kb on + strand at 789.757 kb on - strand at 789.757 kb on - strand at 789.757 kb on - strand at 789.757 kb on - strand at 789.757 kb on - strand at 789.811 kb on + strand at 790.239 kb on + strand, within SMc00774 at 790.320 kb on + strand, within SMc00774 at 790.444 kb on - strand, within SMc00774 at 790.447 kb on + strand, within SMc00774 at 790.447 kb on + strand, within SMc00774 at 790.447 kb on + strand, within SMc00774 at 790.447 kb on + strand, within SMc00774 at 790.447 kb on + strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 786,796 - SMc00773 0.32 -0.5 786,837 + SMc00773 0.37 -0.1 786,837 + SMc00773 0.37 -0.1 786,837 + SMc00773 0.37 +0.2 786,838 - SMc00773 0.37 -1.2 786,838 - SMc00773 0.37 +0.7 786,838 - SMc00773 0.37 -0.3 786,838 - SMc00773 0.37 -0.4 786,941 + SMc00773 0.50 +0.0 787,191 + SMc00773 0.80 -0.2 787,191 + SMc00773 0.80 -1.2 787,191 + SMc00773 0.80 -0.4 787,192 - SMc00773 0.80 +1.7 787,192 - SMc00773 0.80 +0.1 787,384 - +0.3 787,384 - +0.9 787,640 + -0.1 787,641 - +0.1 787,641 - -0.8 788,227 - SMc00838 0.32 +0.9 788,590 + SMc00838 0.52 +0.8 788,807 + SMc00838 0.64 +0.6 788,807 + SMc00838 0.64 +0.2 788,808 - SMc00838 0.64 +0.1 788,823 - SMc00838 0.65 +0.4 788,977 + SMc00838 0.73 +1.1 788,978 - SMc00838 0.73 +0.2 789,364 - +0.7 789,387 - +1.4 789,387 - +0.6 789,450 - +0.7 789,462 + +1.5 789,529 + +1.1 789,529 + +0.3 789,529 + +0.7 789,530 - -0.0 789,615 + +0.2 789,685 + +1.2 789,686 - +0.4 789,686 - +1.3 789,756 + +1.0 789,756 + -0.1 789,757 - +0.7 789,757 - -0.1 789,757 - +0.1 789,757 - -0.7 789,757 - -1.8 789,811 + +1.0 790,239 + SMc00774 0.30 -0.1 790,320 + SMc00774 0.35 +0.1 790,444 - SMc00774 0.41 -0.2 790,447 + SMc00774 0.41 +0.2 790,447 + SMc00774 0.41 +1.4 790,447 + SMc00774 0.41 -1.2 790,447 + SMc00774 0.41 -0.2 790,447 + SMc00774 0.41 +0.0 790,448 - SMc00774 0.41 -0.1 790,448 - SMc00774 0.41 -1.5 790,448 - SMc00774 0.41 -0.3 790,448 - SMc00774 0.41 +0.4 790,448 - SMc00774 0.41 -1.0 790,448 - SMc00774 0.41 +0.3 790,448 - SMc00774 0.41 +0.1 790,448 - SMc00774 0.41 +0.4 790,448 - SMc00774 0.41 -0.3
Or see this region's nucleotide sequence