Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00775 and SMc00776 are separated by 122 nucleotides SMc00776 and SMc00777 are separated by 232 nucleotides SMc00777 and SMc00841 are separated by 162 nucleotides
SMc00775: SMc00775 - iron(III) permease, at 791,887 to 793,569
SMc00775
SMc00776: SMc00776 - sensor histidine kinase, at 793,692 to 797,096
SMc00776
SMc00777: SMc00777 - hypothetical protein, at 797,329 to 797,775
SMc00777
SMc00841: SMc00841 - tRNA-His, at 797,938 to 798,014
SMc00841
Position (kb) 793
794
795
796
797
798 Strain fitness (log2 ratio) -2
-1
0
1 at 792.837 kb on + strand, within SMc00775 at 792.838 kb on - strand, within SMc00775 at 793.058 kb on + strand, within SMc00775 at 793.058 kb on + strand, within SMc00775 at 793.058 kb on + strand, within SMc00775 at 793.059 kb on - strand, within SMc00775 at 793.059 kb on - strand, within SMc00775 at 793.062 kb on + strand, within SMc00775 at 793.062 kb on + strand, within SMc00775 at 793.062 kb on + strand, within SMc00775 at 793.063 kb on - strand, within SMc00775 at 793.063 kb on - strand, within SMc00775 at 793.063 kb on - strand, within SMc00775 at 793.063 kb on - strand, within SMc00775 at 793.063 kb on - strand, within SMc00775 at 793.064 kb on + strand, within SMc00775 at 793.064 kb on + strand, within SMc00775 at 793.064 kb on + strand, within SMc00775 at 793.064 kb on + strand, within SMc00775 at 793.065 kb on - strand, within SMc00775 at 793.065 kb on - strand, within SMc00775 at 793.065 kb on - strand, within SMc00775 at 793.065 kb on - strand, within SMc00775 at 793.065 kb on - strand, within SMc00775 at 793.065 kb on - strand, within SMc00775 at 793.215 kb on - strand, within SMc00775 at 793.289 kb on + strand, within SMc00775 at 793.289 kb on + strand, within SMc00775 at 793.290 kb on - strand, within SMc00775 at 793.726 kb on - strand at 793.726 kb on - strand at 797.097 kb on - strand at 797.107 kb on - strand at 797.223 kb on - strand at 797.269 kb on + strand at 797.269 kb on + strand at 797.270 kb on - strand at 797.270 kb on - strand at 798.057 kb on - strand at 798.080 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 792,837 + SMc00775 0.56 -0.3 792,838 - SMc00775 0.57 +1.3 793,058 + SMc00775 0.70 -0.3 793,058 + SMc00775 0.70 -0.3 793,058 + SMc00775 0.70 +0.7 793,059 - SMc00775 0.70 -0.2 793,059 - SMc00775 0.70 -0.3 793,062 + SMc00775 0.70 +1.2 793,062 + SMc00775 0.70 -1.1 793,062 + SMc00775 0.70 -0.6 793,063 - SMc00775 0.70 +0.1 793,063 - SMc00775 0.70 +0.6 793,063 - SMc00775 0.70 -0.2 793,063 - SMc00775 0.70 +0.2 793,063 - SMc00775 0.70 +0.6 793,064 + SMc00775 0.70 +1.2 793,064 + SMc00775 0.70 -0.5 793,064 + SMc00775 0.70 -0.1 793,064 + SMc00775 0.70 +1.4 793,065 - SMc00775 0.70 +0.5 793,065 - SMc00775 0.70 +0.7 793,065 - SMc00775 0.70 -0.1 793,065 - SMc00775 0.70 -0.7 793,065 - SMc00775 0.70 -0.3 793,065 - SMc00775 0.70 -0.9 793,215 - SMc00775 0.79 +1.2 793,289 + SMc00775 0.83 -0.3 793,289 + SMc00775 0.83 -0.6 793,290 - SMc00775 0.83 -0.9 793,726 - +0.0 793,726 - -0.3 797,097 - -0.2 797,107 - +0.7 797,223 - +0.1 797,269 + -0.4 797,269 + +1.0 797,270 - +0.1 797,270 - -1.9 798,057 - -1.1 798,080 + -0.2
Or see this region's nucleotide sequence