Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00838 and SMc00774 are separated by 184 nucleotides SMc00774 and SMc00775 are separated by 289 nucleotides
SMc00838: SMc00838 - hypothetical protein, at 787,646 to 789,460
SMc00838
SMc00774: SMc00774 - Acetoacetate--CoA ligase (EC 6.2.1.16) <small>(from data)</small>, at 789,645 to 791,597
SMc00774
SMc00775: SMc00775 - iron(III) permease, at 791,887 to 793,569
SMc00775
Position (kb) 789
790
791
792 Strain fitness (log2 ratio) -2
-1
0
1 at 788.807 kb on + strand, within SMc00838 at 788.807 kb on + strand, within SMc00838 at 788.808 kb on - strand, within SMc00838 at 788.823 kb on - strand, within SMc00838 at 788.977 kb on + strand, within SMc00838 at 788.978 kb on - strand, within SMc00838 at 789.364 kb on - strand at 789.387 kb on - strand at 789.387 kb on - strand at 789.450 kb on - strand at 789.462 kb on + strand at 789.529 kb on + strand at 789.529 kb on + strand at 789.529 kb on + strand at 789.530 kb on - strand at 789.615 kb on + strand at 789.685 kb on + strand at 789.686 kb on - strand at 789.686 kb on - strand at 789.756 kb on + strand at 789.756 kb on + strand at 789.757 kb on - strand at 789.757 kb on - strand at 789.757 kb on - strand at 789.757 kb on - strand at 789.757 kb on - strand at 789.811 kb on + strand at 790.239 kb on + strand, within SMc00774 at 790.320 kb on + strand, within SMc00774 at 790.444 kb on - strand, within SMc00774 at 790.447 kb on + strand, within SMc00774 at 790.447 kb on + strand, within SMc00774 at 790.447 kb on + strand, within SMc00774 at 790.447 kb on + strand, within SMc00774 at 790.447 kb on + strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.448 kb on - strand, within SMc00774 at 790.572 kb on + strand at 790.572 kb on + strand, within SMc00774 at 790.572 kb on + strand, within SMc00774 at 790.572 kb on + strand, within SMc00774 at 790.647 kb on + strand, within SMc00774 at 790.648 kb on - strand, within SMc00774 at 790.739 kb on + strand, within SMc00774 at 791.254 kb on - strand, within SMc00774 at 791.254 kb on - strand, within SMc00774 at 791.254 kb on - strand, within SMc00774 at 791.707 kb on + strand at 791.806 kb on + strand at 791.806 kb on + strand at 791.806 kb on + strand at 791.806 kb on + strand at 791.806 kb on + strand at 791.807 kb on - strand at 791.807 kb on - strand at 791.807 kb on - strand at 791.807 kb on - strand at 791.879 kb on + strand at 791.879 kb on + strand at 791.888 kb on + strand at 791.888 kb on + strand at 792.021 kb on + strand at 792.076 kb on + strand, within SMc00775 at 792.077 kb on - strand, within SMc00775 at 792.260 kb on + strand, within SMc00775 at 792.260 kb on + strand, within SMc00775 at 792.260 kb on + strand, within SMc00775 at 792.260 kb on + strand, within SMc00775 at 792.261 kb on - strand, within SMc00775 at 792.261 kb on - strand, within SMc00775 at 792.261 kb on - strand, within SMc00775 at 792.382 kb on + strand, within SMc00775 at 792.584 kb on + strand, within SMc00775 at 792.584 kb on + strand, within SMc00775 at 792.585 kb on - strand, within SMc00775
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 788,807 + SMc00838 0.64 +0.6 788,807 + SMc00838 0.64 +0.2 788,808 - SMc00838 0.64 +0.1 788,823 - SMc00838 0.65 +0.4 788,977 + SMc00838 0.73 +1.1 788,978 - SMc00838 0.73 +0.2 789,364 - +0.7 789,387 - +1.4 789,387 - +0.6 789,450 - +0.7 789,462 + +1.5 789,529 + +1.1 789,529 + +0.3 789,529 + +0.7 789,530 - -0.0 789,615 + +0.2 789,685 + +1.2 789,686 - +0.4 789,686 - +1.3 789,756 + +1.0 789,756 + -0.1 789,757 - +0.7 789,757 - -0.1 789,757 - +0.1 789,757 - -0.7 789,757 - -1.8 789,811 + +1.0 790,239 + SMc00774 0.30 -0.1 790,320 + SMc00774 0.35 +0.1 790,444 - SMc00774 0.41 -0.2 790,447 + SMc00774 0.41 +0.2 790,447 + SMc00774 0.41 +1.4 790,447 + SMc00774 0.41 -1.2 790,447 + SMc00774 0.41 -0.2 790,447 + SMc00774 0.41 +0.0 790,448 - SMc00774 0.41 -0.1 790,448 - SMc00774 0.41 -1.5 790,448 - SMc00774 0.41 -0.3 790,448 - SMc00774 0.41 +0.4 790,448 - SMc00774 0.41 -1.0 790,448 - SMc00774 0.41 +0.3 790,448 - SMc00774 0.41 +0.1 790,448 - SMc00774 0.41 +0.4 790,448 - SMc00774 0.41 -0.3 790,572 + +0.7 790,572 + SMc00774 0.47 +1.5 790,572 + SMc00774 0.47 -0.5 790,572 + SMc00774 0.47 +1.0 790,647 + SMc00774 0.51 +0.4 790,648 - SMc00774 0.51 -0.2 790,739 + SMc00774 0.56 -1.0 791,254 - SMc00774 0.82 +0.3 791,254 - SMc00774 0.82 +0.6 791,254 - SMc00774 0.82 -1.1 791,707 + -0.5 791,806 + +0.4 791,806 + -0.1 791,806 + -0.1 791,806 + -0.8 791,806 + -0.4 791,807 - +0.5 791,807 - +1.4 791,807 - -0.0 791,807 - -0.6 791,879 + -0.0 791,879 + -0.9 791,888 + -0.9 791,888 + +0.4 792,021 + -0.3 792,076 + SMc00775 0.11 +0.2 792,077 - SMc00775 0.11 +0.4 792,260 + SMc00775 0.22 +0.4 792,260 + SMc00775 0.22 -1.4 792,260 + SMc00775 0.22 -0.1 792,260 + SMc00775 0.22 +0.1 792,261 - SMc00775 0.22 -2.0 792,261 - SMc00775 0.22 -0.6 792,261 - SMc00775 0.22 +0.2 792,382 + SMc00775 0.29 -0.8 792,584 + SMc00775 0.41 -0.6 792,584 + SMc00775 0.41 -0.6 792,585 - SMc00775 0.41 -0.0
Or see this region's nucleotide sequence