Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00567 and SMc00568 are separated by 25 nucleotides SMc00568 and SMc00569 are separated by 343 nucleotides SMc00569 and SMc00570 are separated by 26 nucleotides
SMc00567: SMc00567 - 30S ribosomal protein S18, at 1,237,866 to 1,238,114
SMc00567
SMc00568: SMc00568 - 30S ribosomal protein S6, at 1,238,140 to 1,238,589
SMc00568
SMc00569: SMc00569 - hypothetical protein, at 1,238,933 to 1,239,265
SMc00569
SMc00570: SMc00570 - oxidoreductase, at 1,239,292 to 1,240,335
SMc00570
Position (kb)
1238
1239
1240 Strain fitness (log2 ratio)
-1
0
1 at 1239.043 kb on + strand, within SMc00569 at 1239.044 kb on - strand, within SMc00569 at 1239.044 kb on - strand, within SMc00569 at 1239.501 kb on - strand, within SMc00570 at 1239.596 kb on + strand, within SMc00570 at 1239.632 kb on + strand, within SMc00570 at 1239.686 kb on + strand, within SMc00570 at 1239.687 kb on - strand, within SMc00570 at 1239.707 kb on + strand, within SMc00570 at 1239.708 kb on - strand, within SMc00570 at 1239.744 kb on - strand, within SMc00570 at 1239.744 kb on - strand, within SMc00570 at 1239.902 kb on + strand, within SMc00570 at 1239.903 kb on - strand, within SMc00570 at 1239.903 kb on - strand, within SMc00570 at 1239.903 kb on - strand, within SMc00570 at 1239.926 kb on + strand, within SMc00570 at 1239.926 kb on + strand, within SMc00570 at 1239.957 kb on - strand, within SMc00570 at 1239.968 kb on + strand, within SMc00570 at 1239.968 kb on + strand, within SMc00570 at 1239.969 kb on - strand, within SMc00570 at 1239.969 kb on - strand, within SMc00570 at 1240.148 kb on + strand, within SMc00570
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 1,239,043 + SMc00569 0.33 -1.2 1,239,044 - SMc00569 0.33 +0.4 1,239,044 - SMc00569 0.33 -0.2 1,239,501 - SMc00570 0.20 -0.1 1,239,596 + SMc00570 0.29 +0.3 1,239,632 + SMc00570 0.33 -0.6 1,239,686 + SMc00570 0.38 -0.3 1,239,687 - SMc00570 0.38 +0.4 1,239,707 + SMc00570 0.40 -0.2 1,239,708 - SMc00570 0.40 -0.5 1,239,744 - SMc00570 0.43 +0.5 1,239,744 - SMc00570 0.43 +1.7 1,239,902 + SMc00570 0.58 +0.3 1,239,903 - SMc00570 0.59 -0.1 1,239,903 - SMc00570 0.59 +0.4 1,239,903 - SMc00570 0.59 -0.1 1,239,926 + SMc00570 0.61 -0.7 1,239,926 + SMc00570 0.61 -0.3 1,239,957 - SMc00570 0.64 +0.6 1,239,968 + SMc00570 0.65 +0.2 1,239,968 + SMc00570 0.65 -0.3 1,239,969 - SMc00570 0.65 -0.3 1,239,969 - SMc00570 0.65 -0.6 1,240,148 + SMc00570 0.82 +0.4
Or see this region's nucleotide sequence