Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00427 and SMc00428 are separated by 16 nucleotides SMc00428 and SMc00429 are separated by 84 nucleotides SMc00429 and SMc00430 are separated by 117 nucleotides
SMc00427: SMc00427 - peptide chain release factor RF-3 protein, at 374,943 to 376,526
SMc00427
SMc00428: SMc00428 - transmembrane protein, at 376,543 to 377,439
SMc00428
SMc00429: SMc00429 - transcriptional regulator, at 377,524 to 378,333
SMc00429
SMc00430: SMc00430 - oxidoreductase, at 378,451 to 379,434
SMc00430
Position (kb) 377
378
379 Strain fitness (log2 ratio) -2
-1
0
1
2 at 376.544 kb on + strand at 376.545 kb on - strand at 376.545 kb on - strand at 377.194 kb on - strand, within SMc00428 at 377.417 kb on + strand at 377.418 kb on - strand at 377.418 kb on - strand at 377.501 kb on + strand at 377.543 kb on + strand at 377.543 kb on + strand at 377.565 kb on - strand at 377.565 kb on - strand at 377.602 kb on + strand at 377.690 kb on + strand, within SMc00429 at 377.690 kb on + strand, within SMc00429 at 377.691 kb on - strand, within SMc00429 at 377.691 kb on - strand, within SMc00429 at 377.691 kb on - strand, within SMc00429 at 377.691 kb on - strand, within SMc00429 at 377.704 kb on - strand, within SMc00429 at 377.782 kb on - strand, within SMc00429 at 377.816 kb on - strand, within SMc00429 at 378.243 kb on + strand, within SMc00429 at 378.243 kb on + strand, within SMc00429 at 378.377 kb on + strand at 378.377 kb on + strand at 378.377 kb on + strand at 378.379 kb on + strand at 378.379 kb on + strand at 378.380 kb on - strand at 378.459 kb on - strand at 378.862 kb on + strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 379.217 kb on - strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.262 kb on - strand, within SMc00430
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 376,544 + +0.5 376,545 - +1.8 376,545 - +0.2 377,194 - SMc00428 0.73 +0.3 377,417 + -0.3 377,418 - +0.2 377,418 - +0.2 377,501 + +1.2 377,543 + +0.8 377,543 + +0.0 377,565 - -2.1 377,565 - -0.0 377,602 + +2.6 377,690 + SMc00429 0.20 +0.1 377,690 + SMc00429 0.20 +0.1 377,691 - SMc00429 0.21 -0.5 377,691 - SMc00429 0.21 -0.9 377,691 - SMc00429 0.21 +0.3 377,691 - SMc00429 0.21 -0.8 377,704 - SMc00429 0.22 -0.1 377,782 - SMc00429 0.32 -0.7 377,816 - SMc00429 0.36 +0.1 378,243 + SMc00429 0.89 -1.9 378,243 + SMc00429 0.89 -0.8 378,377 + +0.2 378,377 + +0.6 378,377 + +0.9 378,379 + -0.0 378,379 + +0.4 378,380 - -0.2 378,459 - -0.0 378,862 + SMc00430 0.42 +0.0 378,863 - SMc00430 0.42 +1.8 378,863 - SMc00430 0.42 -0.3 378,863 - SMc00430 0.42 +0.1 378,863 - SMc00430 0.42 +0.6 379,217 - SMc00430 0.78 -1.1 379,261 + SMc00430 0.82 -1.5 379,261 + SMc00430 0.82 -0.7 379,261 + SMc00430 0.82 -0.2 379,261 + SMc00430 0.82 +0.3 379,261 + SMc00430 0.82 -0.0 379,262 - SMc00430 0.82 -0.6 379,262 - SMc00430 0.82 +0.8 379,262 - SMc00430 0.82 +1.5
Or see this region's nucleotide sequence