Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1750 and SMa1751 are separated by 382 nucleotides SMa1751 and SMa1753 are separated by 3 nucleotides
SMa1750: SMa1750 - hypothetical protein, at 992,912 to 994,291
SMa1750
SMa1751: SMa1751 - ABC transporter permease, at 994,674 to 995,456
SMa1751
SMa1753: SMa1753 - ABC transporter permease, at 995,460 to 996,638
SMa1753
Position (kb) 994
995
996 Strain fitness (log2 ratio) -2
-1
0
1
2 at 993.680 kb on + strand, within SMa1750 at 993.680 kb on + strand, within SMa1750 at 993.681 kb on - strand, within SMa1750 at 993.681 kb on - strand, within SMa1750 at 993.690 kb on - strand, within SMa1750 at 993.769 kb on + strand, within SMa1750 at 993.769 kb on + strand, within SMa1750 at 993.804 kb on + strand, within SMa1750 at 993.805 kb on - strand, within SMa1750 at 993.832 kb on - strand, within SMa1750 at 993.840 kb on + strand, within SMa1750 at 994.357 kb on + strand at 994.456 kb on - strand at 994.456 kb on - strand at 994.503 kb on + strand at 994.504 kb on - strand at 994.641 kb on - strand at 994.676 kb on - strand at 994.790 kb on + strand, within SMa1751 at 994.790 kb on + strand, within SMa1751 at 994.794 kb on - strand, within SMa1751 at 994.794 kb on - strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 995.071 kb on + strand, within SMa1751 at 995.072 kb on - strand, within SMa1751 at 995.072 kb on - strand, within SMa1751 at 995.152 kb on - strand, within SMa1751 at 995.152 kb on - strand, within SMa1751 at 995.206 kb on - strand, within SMa1751 at 995.206 kb on - strand, within SMa1751 at 995.345 kb on - strand, within SMa1751 at 995.497 kb on + strand at 995.498 kb on - strand at 995.498 kb on - strand at 995.498 kb on - strand at 995.498 kb on - strand at 995.582 kb on - strand, within SMa1753 at 995.582 kb on - strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.645 kb on - strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.648 kb on - strand, within SMa1753 at 995.653 kb on - strand, within SMa1753 at 995.790 kb on - strand, within SMa1753 at 995.800 kb on + strand, within SMa1753 at 995.840 kb on + strand, within SMa1753 at 995.841 kb on - strand, within SMa1753 at 996.053 kb on - strand, within SMa1753
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 993,680 + SMa1750 0.56 -0.3 993,680 + SMa1750 0.56 -1.0 993,681 - SMa1750 0.56 +0.4 993,681 - SMa1750 0.56 -0.8 993,690 - SMa1750 0.56 -0.3 993,769 + SMa1750 0.62 +0.0 993,769 + SMa1750 0.62 -2.1 993,804 + SMa1750 0.65 +0.1 993,805 - SMa1750 0.65 -0.2 993,832 - SMa1750 0.67 -0.1 993,840 + SMa1750 0.67 -0.4 994,357 + -0.1 994,456 - +0.9 994,456 - -0.2 994,503 + +0.6 994,504 - -0.2 994,641 - +0.7 994,676 - +0.6 994,790 + SMa1751 0.15 -0.9 994,790 + SMa1751 0.15 -0.8 994,794 - SMa1751 0.15 -1.5 994,794 - SMa1751 0.15 +0.7 994,899 + SMa1751 0.29 -0.2 994,899 + SMa1751 0.29 +1.1 994,899 + SMa1751 0.29 -1.3 994,899 + SMa1751 0.29 +0.2 995,071 + SMa1751 0.51 -0.1 995,072 - SMa1751 0.51 -0.4 995,072 - SMa1751 0.51 -1.4 995,152 - SMa1751 0.61 -0.5 995,152 - SMa1751 0.61 -0.0 995,206 - SMa1751 0.68 +0.7 995,206 - SMa1751 0.68 +0.2 995,345 - SMa1751 0.86 +0.2 995,497 + -0.4 995,498 - -1.5 995,498 - -0.2 995,498 - -0.5 995,498 - -1.2 995,582 - SMa1753 0.10 -0.3 995,582 - SMa1753 0.10 -0.5 995,644 + SMa1753 0.16 -0.1 995,644 + SMa1753 0.16 -1.9 995,644 + SMa1753 0.16 +1.0 995,645 - SMa1753 0.16 +0.3 995,647 + SMa1753 0.16 -0.1 995,647 + SMa1753 0.16 +0.2 995,647 + SMa1753 0.16 +0.2 995,647 + SMa1753 0.16 -0.2 995,647 + SMa1753 0.16 +0.5 995,648 - SMa1753 0.16 +0.1 995,653 - SMa1753 0.16 -0.0 995,790 - SMa1753 0.28 -1.0 995,800 + SMa1753 0.29 -0.3 995,840 + SMa1753 0.32 -0.7 995,841 - SMa1753 0.32 +2.0 996,053 - SMa1753 0.50 -0.4
Or see this region's nucleotide sequence