Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1434 and SMa1435 overlap by 4 nucleotides SMa1435 and SMa1437 are separated by 12 nucleotides
SMa1434: SMa1434 - ABC transporter ATP-binding protein, at 789,214 to 790,866
SMa1434
SMa1435: SMa1435 - ABC transporter permease, at 790,863 to 791,780
SMa1435
SMa1437: SMa1437 - ABC transporter permease, at 791,793 to 792,707
SMa1437
Position (kb) 790
791
792 Strain fitness (log2 ratio) -2
-1
0
1 at 789.880 kb on - strand, within SMa1434 at 789.995 kb on + strand, within SMa1434 at 789.995 kb on + strand, within SMa1434 at 790.171 kb on + strand, within SMa1434 at 790.171 kb on + strand, within SMa1434 at 790.330 kb on - strand, within SMa1434 at 790.401 kb on - strand, within SMa1434 at 790.532 kb on + strand, within SMa1434 at 790.532 kb on + strand, within SMa1434 at 790.533 kb on - strand, within SMa1434 at 791.015 kb on - strand, within SMa1435 at 791.037 kb on - strand, within SMa1435 at 791.330 kb on + strand, within SMa1435 at 791.331 kb on - strand, within SMa1435 at 791.332 kb on + strand, within SMa1435 at 791.332 kb on + strand, within SMa1435 at 791.333 kb on - strand, within SMa1435 at 791.406 kb on - strand, within SMa1435 at 791.406 kb on - strand, within SMa1435 at 791.406 kb on - strand, within SMa1435 at 791.407 kb on + strand, within SMa1435 at 791.407 kb on + strand, within SMa1435 at 791.422 kb on + strand, within SMa1435 at 791.422 kb on + strand, within SMa1435 at 791.560 kb on + strand, within SMa1435 at 791.682 kb on + strand, within SMa1435 at 791.682 kb on + strand, within SMa1435 at 791.683 kb on - strand, within SMa1435 at 791.754 kb on + strand at 791.755 kb on - strand at 791.824 kb on + strand at 792.098 kb on + strand, within SMa1437 at 792.098 kb on + strand, within SMa1437 at 792.212 kb on + strand, within SMa1437 at 792.509 kb on - strand, within SMa1437
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 789,880 - SMa1434 0.40 -1.1 789,995 + SMa1434 0.47 -0.2 789,995 + SMa1434 0.47 -0.7 790,171 + SMa1434 0.58 +0.1 790,171 + SMa1434 0.58 +0.6 790,330 - SMa1434 0.68 -0.6 790,401 - SMa1434 0.72 +0.7 790,532 + SMa1434 0.80 -0.2 790,532 + SMa1434 0.80 +0.3 790,533 - SMa1434 0.80 -0.4 791,015 - SMa1435 0.17 -0.3 791,037 - SMa1435 0.19 +0.4 791,330 + SMa1435 0.51 -0.1 791,331 - SMa1435 0.51 -0.3 791,332 + SMa1435 0.51 -0.6 791,332 + SMa1435 0.51 -0.0 791,333 - SMa1435 0.51 +0.1 791,406 - SMa1435 0.59 -1.2 791,406 - SMa1435 0.59 -0.1 791,406 - SMa1435 0.59 -0.2 791,407 + SMa1435 0.59 +0.1 791,407 + SMa1435 0.59 -0.6 791,422 + SMa1435 0.61 -1.8 791,422 + SMa1435 0.61 -0.0 791,560 + SMa1435 0.76 -0.1 791,682 + SMa1435 0.89 -0.8 791,682 + SMa1435 0.89 -0.6 791,683 - SMa1435 0.89 -0.1 791,754 + +0.2 791,755 - -1.0 791,824 + +0.2 792,098 + SMa1437 0.33 +0.5 792,098 + SMa1437 0.33 +0.1 792,212 + SMa1437 0.46 -0.5 792,509 - SMa1437 0.78 +0.6
Or see this region's nucleotide sequence