Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1259 and SMa1261 are separated by 45 nucleotides SMa1261 and SMa1262 are separated by 356 nucleotides
SMa1259: SMa1259 - hypothetical protein, at 688,231 to 689,589
SMa1259
SMa1261: SMa1261 - hypothetical protein, at 689,635 to 689,952
SMa1261
SMa1262: SMa1262 - hypothetical protein, at 690,309 to 691,118
SMa1262
Position (kb) 689
690 Strain fitness (log2 ratio) -2
-1
0
1 at 688.706 kb on + strand, within SMa1259 at 688.706 kb on + strand, within SMa1259 at 688.707 kb on - strand, within SMa1259 at 688.779 kb on - strand, within SMa1259 at 689.060 kb on + strand, within SMa1259 at 689.060 kb on + strand, within SMa1259 at 689.061 kb on - strand, within SMa1259 at 689.179 kb on - strand, within SMa1259 at 689.230 kb on + strand, within SMa1259 at 689.263 kb on + strand, within SMa1259 at 689.263 kb on + strand, within SMa1259 at 689.591 kb on + strand at 689.592 kb on - strand at 689.592 kb on - strand at 689.592 kb on - strand at 689.726 kb on + strand, within SMa1261 at 689.727 kb on - strand, within SMa1261 at 689.808 kb on + strand, within SMa1261 at 689.808 kb on + strand, within SMa1261 at 689.809 kb on - strand, within SMa1261 at 689.809 kb on - strand, within SMa1261 at 689.997 kb on + strand at 689.997 kb on + strand at 689.997 kb on + strand at 690.243 kb on + strand at 690.243 kb on + strand at 690.336 kb on - strand at 690.785 kb on + strand, within SMa1262 at 690.861 kb on + strand, within SMa1262 at 690.862 kb on - strand, within SMa1262 at 690.867 kb on + strand, within SMa1262 at 690.867 kb on + strand, within SMa1262 at 690.867 kb on + strand, within SMa1262 at 690.868 kb on - strand, within SMa1262 at 690.874 kb on - strand, within SMa1262
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 688,706 + SMa1259 0.35 +0.1 688,706 + SMa1259 0.35 -0.2 688,707 - SMa1259 0.35 -2.1 688,779 - SMa1259 0.40 +0.4 689,060 + SMa1259 0.61 +1.5 689,060 + SMa1259 0.61 -0.5 689,061 - SMa1259 0.61 +1.5 689,179 - SMa1259 0.70 +0.4 689,230 + SMa1259 0.74 +0.3 689,263 + SMa1259 0.76 -0.5 689,263 + SMa1259 0.76 +0.1 689,591 + +1.0 689,592 - +0.1 689,592 - +0.5 689,592 - -0.2 689,726 + SMa1261 0.29 +0.3 689,727 - SMa1261 0.29 +1.1 689,808 + SMa1261 0.54 +0.3 689,808 + SMa1261 0.54 +0.2 689,809 - SMa1261 0.55 +1.0 689,809 - SMa1261 0.55 +0.4 689,997 + +0.0 689,997 + +0.2 689,997 + -0.4 690,243 + +0.8 690,243 + -0.0 690,336 - +0.2 690,785 + SMa1262 0.59 -0.3 690,861 + SMa1262 0.68 -0.2 690,862 - SMa1262 0.68 +0.5 690,867 + SMa1262 0.69 -0.1 690,867 + SMa1262 0.69 +0.3 690,867 + SMa1262 0.69 -0.4 690,868 - SMa1262 0.69 +0.5 690,874 - SMa1262 0.70 +0.4
Or see this region's nucleotide sequence