Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1247 and SMa1250 are separated by 98 nucleotides SMa1250 and SMa1252 are separated by 245 nucleotides
SMa1247: SMa1247 - NirV protein, at 682,736 to 683,650
SMa1247
SMa1250: SMa1250 - NirK nitrite reductase, at 683,749 to 684,879
SMa1250
SMa1252: SMa1252 - NnrS family protein, at 685,125 to 686,336
SMa1252
Position (kb) 683
684
685 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 682.761 kb on - strand at 682.782 kb on + strand at 682.782 kb on + strand at 682.782 kb on + strand at 682.782 kb on + strand at 682.783 kb on - strand at 682.908 kb on + strand, within SMa1247 at 682.908 kb on + strand, within SMa1247 at 682.969 kb on + strand, within SMa1247 at 682.969 kb on + strand, within SMa1247 at 683.247 kb on + strand, within SMa1247 at 683.248 kb on - strand, within SMa1247 at 683.306 kb on + strand, within SMa1247 at 683.306 kb on + strand, within SMa1247 at 683.306 kb on + strand, within SMa1247 at 683.380 kb on - strand, within SMa1247 at 683.676 kb on + strand at 683.676 kb on + strand at 683.676 kb on + strand at 683.676 kb on + strand at 683.677 kb on - strand at 683.677 kb on - strand at 683.865 kb on - strand, within SMa1250 at 683.870 kb on + strand, within SMa1250 at 683.870 kb on + strand, within SMa1250 at 683.870 kb on + strand, within SMa1250 at 683.870 kb on + strand, within SMa1250 at 683.871 kb on - strand, within SMa1250 at 683.871 kb on - strand, within SMa1250 at 683.894 kb on + strand, within SMa1250 at 683.894 kb on + strand, within SMa1250 at 683.895 kb on - strand, within SMa1250 at 683.985 kb on - strand, within SMa1250 at 684.145 kb on + strand, within SMa1250 at 684.146 kb on - strand, within SMa1250 at 684.185 kb on + strand, within SMa1250 at 684.186 kb on - strand, within SMa1250 at 684.221 kb on + strand, within SMa1250 at 684.221 kb on + strand, within SMa1250 at 684.222 kb on - strand, within SMa1250 at 684.222 kb on - strand, within SMa1250 at 684.222 kb on - strand, within SMa1250 at 684.222 kb on - strand, within SMa1250 at 684.242 kb on + strand, within SMa1250 at 684.242 kb on + strand, within SMa1250 at 684.242 kb on + strand, within SMa1250 at 684.243 kb on - strand, within SMa1250 at 684.243 kb on - strand, within SMa1250 at 684.243 kb on - strand, within SMa1250 at 684.245 kb on + strand, within SMa1250 at 684.245 kb on + strand, within SMa1250 at 684.246 kb on - strand, within SMa1250 at 684.246 kb on - strand, within SMa1250 at 684.246 kb on - strand, within SMa1250 at 684.257 kb on + strand, within SMa1250 at 684.258 kb on - strand, within SMa1250 at 684.261 kb on + strand, within SMa1250 at 684.262 kb on - strand, within SMa1250 at 684.262 kb on - strand, within SMa1250 at 684.372 kb on - strand, within SMa1250 at 684.533 kb on + strand, within SMa1250 at 684.533 kb on + strand, within SMa1250 at 684.534 kb on - strand, within SMa1250 at 684.688 kb on - strand, within SMa1250 at 684.931 kb on + strand at 684.931 kb on + strand at 684.932 kb on - strand at 684.932 kb on - strand at 684.932 kb on - strand at 685.021 kb on + strand at 685.082 kb on + strand at 685.083 kb on - strand at 685.158 kb on + strand at 685.253 kb on + strand, within SMa1252 at 685.305 kb on + strand, within SMa1252 at 685.306 kb on - strand, within SMa1252 at 685.609 kb on + strand, within SMa1252 at 685.610 kb on - strand, within SMa1252 at 685.698 kb on + strand, within SMa1252 at 685.698 kb on + strand, within SMa1252 at 685.794 kb on + strand, within SMa1252 at 685.794 kb on + strand, within SMa1252 at 685.795 kb on - strand, within SMa1252
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 682,761 - -0.3 682,782 + -2.0 682,782 + -0.0 682,782 + +0.5 682,782 + -0.5 682,783 - -1.1 682,908 + SMa1247 0.19 -0.9 682,908 + SMa1247 0.19 +0.5 682,969 + SMa1247 0.25 +0.5 682,969 + SMa1247 0.25 -0.3 683,247 + SMa1247 0.56 +1.1 683,248 - SMa1247 0.56 -0.1 683,306 + SMa1247 0.62 -0.4 683,306 + SMa1247 0.62 -0.0 683,306 + SMa1247 0.62 +0.3 683,380 - SMa1247 0.70 +0.3 683,676 + +0.3 683,676 + -1.5 683,676 + -1.4 683,676 + -1.5 683,677 - -0.3 683,677 - +0.2 683,865 - SMa1250 0.10 -0.2 683,870 + SMa1250 0.11 +0.5 683,870 + SMa1250 0.11 -0.0 683,870 + SMa1250 0.11 -1.3 683,870 + SMa1250 0.11 +0.2 683,871 - SMa1250 0.11 +1.0 683,871 - SMa1250 0.11 -0.2 683,894 + SMa1250 0.13 -0.0 683,894 + SMa1250 0.13 +1.5 683,895 - SMa1250 0.13 +0.5 683,985 - SMa1250 0.21 -0.1 684,145 + SMa1250 0.35 +0.8 684,146 - SMa1250 0.35 -0.3 684,185 + SMa1250 0.39 +0.2 684,186 - SMa1250 0.39 +0.4 684,221 + SMa1250 0.42 +0.2 684,221 + SMa1250 0.42 +0.2 684,222 - SMa1250 0.42 +0.5 684,222 - SMa1250 0.42 -0.3 684,222 - SMa1250 0.42 -0.2 684,222 - SMa1250 0.42 +0.2 684,242 + SMa1250 0.44 -0.2 684,242 + SMa1250 0.44 -0.1 684,242 + SMa1250 0.44 +0.5 684,243 - SMa1250 0.44 -1.3 684,243 - SMa1250 0.44 +0.6 684,243 - SMa1250 0.44 -0.2 684,245 + SMa1250 0.44 +0.4 684,245 + SMa1250 0.44 +1.8 684,246 - SMa1250 0.44 +0.6 684,246 - SMa1250 0.44 +1.2 684,246 - SMa1250 0.44 +0.4 684,257 + SMa1250 0.45 +0.3 684,258 - SMa1250 0.45 +0.9 684,261 + SMa1250 0.45 -0.2 684,262 - SMa1250 0.45 -0.1 684,262 - SMa1250 0.45 +0.3 684,372 - SMa1250 0.55 +1.2 684,533 + SMa1250 0.69 +0.6 684,533 + SMa1250 0.69 -0.0 684,534 - SMa1250 0.69 +1.9 684,688 - SMa1250 0.83 +0.5 684,931 + -0.1 684,931 + +0.9 684,932 - +0.1 684,932 - +0.5 684,932 - -0.2 685,021 + -0.3 685,082 + +0.2 685,083 - -0.5 685,158 + +0.9 685,253 + SMa1252 0.11 +0.9 685,305 + SMa1252 0.15 +0.1 685,306 - SMa1252 0.15 +0.0 685,609 + SMa1252 0.40 -3.8 685,610 - SMa1252 0.40 -0.0 685,698 + SMa1252 0.47 +1.2 685,698 + SMa1252 0.47 +0.1 685,794 + SMa1252 0.55 +0.0 685,794 + SMa1252 0.55 +0.2 685,795 - SMa1252 0.55 +0.4
Or see this region's nucleotide sequence