Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1231 and SMa1232 are separated by 63 nucleotides SMa1232 and SMa1233 are separated by 3 nucleotides SMa1233 and SMa1236 overlap by 31 nucleotides
SMa1231: SMa1231 - hypothetical protein, at 675,132 to 675,956
SMa1231
SMa1232: SMa1232 - NapC membrane-bound tetraheme cytochrome c subunit, at 676,020 to 676,721
SMa1232
SMa1233: SMa1233 - NapB periplasmic nitrate reductase cytochrome c- type subunit, at 676,725 to 677,228
SMa1233
SMa1236: SMa1236 - nitrate reductase catalytic subunit, at 677,198 to 679,702
SMa1236
Position (kb) 676
677 Strain fitness (log2 ratio) -2
-1
0
1 at 675.051 kb on + strand at 675.085 kb on + strand at 675.085 kb on + strand at 675.085 kb on + strand at 675.088 kb on + strand at 675.088 kb on + strand at 675.164 kb on + strand at 675.165 kb on - strand at 675.239 kb on - strand, within SMa1231 at 675.385 kb on - strand, within SMa1231 at 675.482 kb on - strand, within SMa1231 at 675.482 kb on - strand, within SMa1231 at 675.487 kb on + strand, within SMa1231 at 675.514 kb on + strand, within SMa1231 at 675.532 kb on - strand, within SMa1231 at 675.532 kb on - strand, within SMa1231 at 675.575 kb on + strand, within SMa1231 at 675.575 kb on + strand, within SMa1231 at 675.676 kb on + strand, within SMa1231 at 675.676 kb on + strand, within SMa1231 at 675.741 kb on + strand, within SMa1231 at 675.741 kb on + strand, within SMa1231 at 675.741 kb on + strand, within SMa1231 at 675.742 kb on - strand, within SMa1231 at 675.812 kb on - strand, within SMa1231 at 675.865 kb on - strand, within SMa1231 at 675.950 kb on + strand at 675.950 kb on + strand at 675.951 kb on - strand at 675.951 kb on - strand at 675.951 kb on - strand at 675.954 kb on + strand at 676.021 kb on + strand at 676.213 kb on + strand, within SMa1232 at 676.374 kb on + strand, within SMa1232 at 676.375 kb on - strand, within SMa1232 at 676.506 kb on - strand, within SMa1232 at 676.726 kb on + strand at 676.779 kb on - strand, within SMa1233 at 676.879 kb on + strand, within SMa1233 at 676.879 kb on + strand, within SMa1233 at 676.880 kb on - strand, within SMa1233 at 677.312 kb on + strand at 677.446 kb on + strand at 677.476 kb on - strand, within SMa1236 at 677.554 kb on - strand, within SMa1236 at 677.586 kb on + strand, within SMa1236 at 677.628 kb on + strand, within SMa1236 at 677.659 kb on - strand, within SMa1236
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 675,051 + +1.1 675,085 + -0.1 675,085 + -0.2 675,085 + +0.9 675,088 + +0.1 675,088 + +0.2 675,164 + +1.5 675,165 - +0.6 675,239 - SMa1231 0.13 -0.3 675,385 - SMa1231 0.31 +0.2 675,482 - SMa1231 0.42 +0.3 675,482 - SMa1231 0.42 +0.6 675,487 + SMa1231 0.43 +0.6 675,514 + SMa1231 0.46 +0.1 675,532 - SMa1231 0.48 +1.0 675,532 - SMa1231 0.48 +0.5 675,575 + SMa1231 0.54 +0.2 675,575 + SMa1231 0.54 -2.1 675,676 + SMa1231 0.66 +0.6 675,676 + SMa1231 0.66 -0.1 675,741 + SMa1231 0.74 +0.0 675,741 + SMa1231 0.74 +0.7 675,741 + SMa1231 0.74 +1.0 675,742 - SMa1231 0.74 +0.1 675,812 - SMa1231 0.82 +0.9 675,865 - SMa1231 0.89 +0.2 675,950 + +0.5 675,950 + +1.5 675,951 - +1.3 675,951 - -1.7 675,951 - +0.8 675,954 + +0.3 676,021 + -0.3 676,213 + SMa1232 0.27 +0.5 676,374 + SMa1232 0.50 +0.8 676,375 - SMa1232 0.51 +0.7 676,506 - SMa1232 0.69 +0.3 676,726 + +0.4 676,779 - SMa1233 0.11 +0.0 676,879 + SMa1233 0.31 +0.5 676,879 + SMa1233 0.31 -0.8 676,880 - SMa1233 0.31 -0.1 677,312 + +0.3 677,446 + +0.6 677,476 - SMa1236 0.11 +0.1 677,554 - SMa1236 0.14 +0.3 677,586 + SMa1236 0.15 +0.0 677,628 + SMa1236 0.17 +0.9 677,659 - SMa1236 0.18 +0.5
Or see this region's nucleotide sequence