Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1207 and SMa1208 are separated by 73 nucleotides SMa1208 and SMa1209 overlap by 4 nucleotides SMa1209 and SMa1210 overlap by 4 nucleotides SMa1210 and SMa1211 overlap by 4 nucleotides
SMa1207: SMa1207 - Crp family transcriptional regulator, at 661,869 to 662,549
SMa1207
SMa1208: SMa1208 - FixS1 nitrogen fixation protein, at 662,623 to 662,790
SMa1208
SMa1209: SMa1209 - FixI1 ATPase, at 662,787 to 665,060
SMa1209
SMa1210: SMa1210 - nitrogen fixation protein FixH, at 665,057 to 665,560
SMa1210
SMa1211: SMa1211 - FixG iron sulfur membrane protein, at 665,557 to 667,131
SMa1211
Position (kb) 662
663
664
665
666 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 661.789 kb on + strand at 661.859 kb on + strand at 661.859 kb on + strand at 661.859 kb on + strand at 661.860 kb on - strand at 661.860 kb on - strand at 662.068 kb on + strand, within SMa1207 at 662.133 kb on - strand, within SMa1207 at 662.272 kb on + strand, within SMa1207 at 662.272 kb on + strand, within SMa1207 at 662.272 kb on + strand, within SMa1207 at 662.273 kb on - strand, within SMa1207 at 662.273 kb on - strand, within SMa1207 at 662.273 kb on - strand, within SMa1207 at 662.273 kb on - strand, within SMa1207 at 662.431 kb on + strand, within SMa1207 at 662.431 kb on + strand, within SMa1207 at 662.432 kb on - strand, within SMa1207 at 662.587 kb on + strand at 662.587 kb on + strand at 662.588 kb on - strand at 662.588 kb on - strand at 662.620 kb on + strand at 662.621 kb on - strand at 662.621 kb on - strand at 662.621 kb on - strand at 662.621 kb on - strand at 662.624 kb on + strand at 662.669 kb on - strand, within SMa1208 at 662.774 kb on + strand at 662.774 kb on + strand at 662.774 kb on + strand at 662.774 kb on + strand at 662.775 kb on - strand at 662.778 kb on + strand at 662.778 kb on + strand at 662.778 kb on + strand at 662.778 kb on + strand at 662.779 kb on - strand at 662.779 kb on - strand at 662.779 kb on - strand at 662.779 kb on - strand at 662.811 kb on + strand at 662.811 kb on + strand at 662.969 kb on - strand at 662.999 kb on + strand at 663.207 kb on + strand, within SMa1209 at 663.582 kb on + strand, within SMa1209 at 663.582 kb on + strand, within SMa1209 at 663.583 kb on - strand, within SMa1209 at 663.614 kb on + strand, within SMa1209 at 663.614 kb on + strand, within SMa1209 at 663.889 kb on - strand, within SMa1209 at 664.016 kb on + strand, within SMa1209 at 664.146 kb on + strand, within SMa1209 at 664.239 kb on + strand, within SMa1209 at 664.351 kb on + strand, within SMa1209 at 664.456 kb on + strand, within SMa1209 at 664.534 kb on + strand, within SMa1209 at 664.552 kb on + strand, within SMa1209 at 664.552 kb on + strand, within SMa1209 at 664.553 kb on - strand, within SMa1209 at 664.794 kb on - strand, within SMa1209 at 664.794 kb on - strand, within SMa1209 at 664.921 kb on + strand at 664.938 kb on + strand at 664.939 kb on - strand at 665.042 kb on + strand at 665.042 kb on + strand at 665.400 kb on + strand, within SMa1210 at 665.400 kb on + strand, within SMa1210 at 665.401 kb on - strand at 665.401 kb on - strand, within SMa1210 at 665.806 kb on - strand, within SMa1211 at 665.806 kb on - strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.850 kb on - strand, within SMa1211
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 661,789 + +0.5 661,859 + +0.2 661,859 + +0.1 661,859 + +1.5 661,860 - -0.1 661,860 - -0.2 662,068 + SMa1207 0.29 +0.0 662,133 - SMa1207 0.39 +0.5 662,272 + SMa1207 0.59 +0.5 662,272 + SMa1207 0.59 +1.8 662,272 + SMa1207 0.59 -0.4 662,273 - SMa1207 0.59 +0.0 662,273 - SMa1207 0.59 +0.3 662,273 - SMa1207 0.59 +0.7 662,273 - SMa1207 0.59 -0.1 662,431 + SMa1207 0.83 -0.1 662,431 + SMa1207 0.83 +0.3 662,432 - SMa1207 0.83 -0.4 662,587 + +1.0 662,587 + +0.2 662,588 - -0.3 662,588 - +0.1 662,620 + +0.9 662,621 - +1.0 662,621 - +0.9 662,621 - -0.5 662,621 - -0.7 662,624 + +0.5 662,669 - SMa1208 0.27 +1.5 662,774 + -0.0 662,774 + +0.2 662,774 + -0.1 662,774 + +0.3 662,775 - +0.6 662,778 + +2.5 662,778 + -0.3 662,778 + -0.3 662,778 + +3.0 662,779 - -0.4 662,779 - +0.5 662,779 - +1.0 662,779 - +0.8 662,811 + -0.5 662,811 + +0.3 662,969 - +0.5 662,999 + -0.3 663,207 + SMa1209 0.18 +2.7 663,582 + SMa1209 0.35 -0.3 663,582 + SMa1209 0.35 +0.1 663,583 - SMa1209 0.35 -0.2 663,614 + SMa1209 0.36 -0.0 663,614 + SMa1209 0.36 +1.0 663,889 - SMa1209 0.48 +0.0 664,016 + SMa1209 0.54 +0.2 664,146 + SMa1209 0.60 +1.0 664,239 + SMa1209 0.64 +0.3 664,351 + SMa1209 0.69 +0.6 664,456 + SMa1209 0.73 +1.2 664,534 + SMa1209 0.77 +0.3 664,552 + SMa1209 0.78 -0.1 664,552 + SMa1209 0.78 +0.4 664,553 - SMa1209 0.78 -0.1 664,794 - SMa1209 0.88 -0.2 664,794 - SMa1209 0.88 +0.7 664,921 + +1.5 664,938 + +0.8 664,939 - +0.3 665,042 + +0.5 665,042 + +0.4 665,400 + SMa1210 0.68 -0.2 665,400 + SMa1210 0.68 -2.2 665,401 - +0.1 665,401 - SMa1210 0.68 -0.3 665,806 - SMa1211 0.16 -0.0 665,806 - SMa1211 0.16 +0.5 665,849 + SMa1211 0.19 -0.4 665,849 + SMa1211 0.19 -0.2 665,849 + SMa1211 0.19 -0.9 665,850 - SMa1211 0.19 +0.4
Or see this region's nucleotide sequence