Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1184 and SMa1185 overlap by 4 nucleotides SMa1185 and SMa1186 overlap by 4 nucleotides SMa1186 and SMa1188 overlap by 8 nucleotides
SMa1184: SMa1184 - NosF ATPase, at 651,246 to 652,160
SMa1184
SMa1185: SMa1185 - NosY permease, at 652,157 to 652,984
SMa1185
SMa1186: SMa1186 - NosL copper chaperone, at 652,981 to 653,538
SMa1186
SMa1188: SMa1188 - NosX accesory protein, at 653,531 to 654,535
SMa1188
Position (kb) 652
653
654 Strain fitness (log2 ratio) -1
0
1
2 at 652.126 kb on - strand at 652.126 kb on - strand at 652.126 kb on - strand at 652.126 kb on - strand at 652.165 kb on + strand at 652.171 kb on + strand at 652.218 kb on + strand at 652.236 kb on + strand at 652.236 kb on + strand at 652.278 kb on + strand, within SMa1185 at 652.434 kb on - strand, within SMa1185 at 652.488 kb on + strand, within SMa1185 at 652.645 kb on - strand, within SMa1185 at 652.645 kb on - strand, within SMa1185 at 652.693 kb on + strand, within SMa1185 at 652.694 kb on - strand, within SMa1185 at 652.694 kb on - strand, within SMa1185 at 652.718 kb on + strand, within SMa1185 at 652.818 kb on - strand, within SMa1185 at 652.834 kb on - strand, within SMa1185 at 652.980 kb on + strand at 652.980 kb on + strand at 652.980 kb on + strand at 652.981 kb on - strand at 653.049 kb on + strand, within SMa1186 at 653.049 kb on + strand, within SMa1186 at 653.049 kb on + strand, within SMa1186 at 653.050 kb on - strand, within SMa1186 at 653.098 kb on + strand, within SMa1186 at 653.245 kb on + strand, within SMa1186 at 653.245 kb on + strand, within SMa1186 at 653.246 kb on - strand, within SMa1186 at 653.246 kb on - strand, within SMa1186 at 653.246 kb on - strand, within SMa1186 at 653.246 kb on - strand, within SMa1186 at 653.255 kb on - strand, within SMa1186 at 653.323 kb on + strand, within SMa1186 at 653.324 kb on - strand, within SMa1186 at 653.458 kb on + strand, within SMa1186 at 653.458 kb on + strand, within SMa1186 at 653.458 kb on + strand, within SMa1186 at 653.459 kb on - strand, within SMa1186 at 653.459 kb on - strand, within SMa1186 at 653.689 kb on - strand, within SMa1188 at 653.897 kb on - strand, within SMa1188 at 653.921 kb on + strand, within SMa1188 at 653.921 kb on + strand, within SMa1188 at 653.922 kb on - strand, within SMa1188 at 653.922 kb on - strand, within SMa1188 at 653.922 kb on - strand, within SMa1188 at 654.078 kb on + strand, within SMa1188 at 654.078 kb on + strand, within SMa1188 at 654.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 652,126 - +0.2 652,126 - +0.1 652,126 - +0.1 652,126 - -0.1 652,165 + +0.5 652,171 + -1.0 652,218 + +0.3 652,236 + +1.0 652,236 + -0.1 652,278 + SMa1185 0.15 -0.2 652,434 - SMa1185 0.33 +0.2 652,488 + SMa1185 0.40 -0.0 652,645 - SMa1185 0.59 +0.1 652,645 - SMa1185 0.59 -0.3 652,693 + SMa1185 0.65 +0.5 652,694 - SMa1185 0.65 +0.5 652,694 - SMa1185 0.65 -1.2 652,718 + SMa1185 0.68 +0.2 652,818 - SMa1185 0.80 -0.3 652,834 - SMa1185 0.82 -0.4 652,980 + +0.1 652,980 + +0.9 652,980 + +0.8 652,981 - -0.1 653,049 + SMa1186 0.12 -0.0 653,049 + SMa1186 0.12 +2.2 653,049 + SMa1186 0.12 +0.3 653,050 - SMa1186 0.12 +0.1 653,098 + SMa1186 0.21 -0.1 653,245 + SMa1186 0.47 +1.3 653,245 + SMa1186 0.47 +0.4 653,246 - SMa1186 0.47 +0.3 653,246 - SMa1186 0.47 -0.6 653,246 - SMa1186 0.47 -0.1 653,246 - SMa1186 0.47 +0.5 653,255 - SMa1186 0.49 -0.5 653,323 + SMa1186 0.61 -0.1 653,324 - SMa1186 0.61 +0.8 653,458 + SMa1186 0.85 +0.2 653,458 + SMa1186 0.85 -0.9 653,458 + SMa1186 0.85 +1.5 653,459 - SMa1186 0.86 -0.4 653,459 - SMa1186 0.86 +1.0 653,689 - SMa1188 0.16 -0.5 653,897 - SMa1188 0.36 -0.4 653,921 + SMa1188 0.39 -0.1 653,921 + SMa1188 0.39 +1.1 653,922 - SMa1188 0.39 -0.5 653,922 - SMa1188 0.39 -0.3 653,922 - SMa1188 0.39 +1.8 654,078 + SMa1188 0.54 -0.1 654,078 + SMa1188 0.54 +1.0 654,478 - -0.1
Or see this region's nucleotide sequence