Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1147 and SMa1149 are separated by 137 nucleotides SMa1149 and SMa1151 are separated by 58 nucleotides SMa1151 and SMa1153 are separated by 145 nucleotides
SMa1147: SMa1147 - hypothetical protein, at 626,512 to 627,336
SMa1147
SMa1149: SMa1149 - hypothetical protein, at 627,474 to 628,307
SMa1149
SMa1151: SMa1151 - hypothetical protein, at 628,366 to 628,821
SMa1151
SMa1153: SMa1153 - hypothetical protein, at 628,967 to 629,641
SMa1153
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 626.518 kb on + strand at 626.567 kb on + strand at 626.656 kb on + strand, within SMa1147 at 626.702 kb on + strand, within SMa1147 at 626.759 kb on + strand, within SMa1147 at 626.782 kb on + strand, within SMa1147 at 626.782 kb on + strand, within SMa1147 at 627.027 kb on + strand at 627.050 kb on + strand, within SMa1147 at 627.051 kb on - strand, within SMa1147 at 627.059 kb on + strand, within SMa1147 at 627.059 kb on + strand, within SMa1147 at 627.059 kb on + strand, within SMa1147 at 627.121 kb on + strand, within SMa1147 at 627.141 kb on - strand, within SMa1147 at 627.196 kb on - strand, within SMa1147 at 627.252 kb on + strand, within SMa1147 at 627.252 kb on + strand, within SMa1147 at 627.252 kb on + strand, within SMa1147 at 627.253 kb on - strand, within SMa1147 at 627.253 kb on - strand, within SMa1147 at 627.253 kb on - strand, within SMa1147 at 627.253 kb on - strand, within SMa1147 at 627.253 kb on - strand, within SMa1147 at 627.253 kb on - strand, within SMa1147 at 627.286 kb on - strand at 627.321 kb on - strand at 627.377 kb on + strand at 627.378 kb on - strand at 627.429 kb on + strand at 627.480 kb on + strand at 627.481 kb on - strand at 627.481 kb on - strand at 627.481 kb on - strand at 627.499 kb on + strand at 627.745 kb on - strand, within SMa1149 at 627.776 kb on - strand, within SMa1149 at 627.803 kb on + strand, within SMa1149 at 627.803 kb on + strand, within SMa1149 at 628.092 kb on + strand, within SMa1149 at 628.092 kb on + strand, within SMa1149 at 628.093 kb on - strand, within SMa1149 at 628.093 kb on - strand, within SMa1149 at 628.097 kb on - strand, within SMa1149 at 628.097 kb on - strand, within SMa1149 at 628.311 kb on - strand at 628.311 kb on - strand at 628.326 kb on - strand at 628.328 kb on - strand at 628.340 kb on + strand at 628.357 kb on + strand at 628.357 kb on + strand at 628.358 kb on - strand at 628.576 kb on + strand, within SMa1151 at 628.576 kb on + strand, within SMa1151 at 628.631 kb on - strand, within SMa1151 at 628.631 kb on - strand, within SMa1151 at 628.631 kb on - strand, within SMa1151 at 628.631 kb on - strand, within SMa1151 at 628.709 kb on + strand, within SMa1151 at 628.709 kb on + strand, within SMa1151 at 628.709 kb on + strand, within SMa1151 at 628.710 kb on - strand, within SMa1151 at 628.725 kb on + strand, within SMa1151 at 628.727 kb on + strand, within SMa1151 at 628.788 kb on + strand at 628.789 kb on - strand at 628.789 kb on - strand at 628.870 kb on - strand at 628.870 kb on - strand at 628.925 kb on + strand at 628.925 kb on + strand at 628.925 kb on + strand at 628.926 kb on - strand at 628.926 kb on - strand at 628.926 kb on - strand at 628.949 kb on + strand at 629.015 kb on + strand at 629.015 kb on + strand at 629.015 kb on + strand at 629.093 kb on + strand, within SMa1153 at 629.094 kb on - strand, within SMa1153 at 629.094 kb on - strand, within SMa1153
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 626,518 + +0.4 626,567 + +2.5 626,656 + SMa1147 0.17 +1.5 626,702 + SMa1147 0.23 -0.0 626,759 + SMa1147 0.30 +0.0 626,782 + SMa1147 0.33 -1.0 626,782 + SMa1147 0.33 +0.1 627,027 + -0.9 627,050 + SMa1147 0.65 +0.6 627,051 - SMa1147 0.65 +0.1 627,059 + SMa1147 0.66 -1.9 627,059 + SMa1147 0.66 +0.7 627,059 + SMa1147 0.66 -0.7 627,121 + SMa1147 0.74 +1.5 627,141 - SMa1147 0.76 +0.0 627,196 - SMa1147 0.83 +0.3 627,252 + SMa1147 0.90 +0.1 627,252 + SMa1147 0.90 +0.3 627,252 + SMa1147 0.90 +0.3 627,253 - SMa1147 0.90 +0.7 627,253 - SMa1147 0.90 +0.7 627,253 - SMa1147 0.90 +0.2 627,253 - SMa1147 0.90 -0.5 627,253 - SMa1147 0.90 -1.7 627,253 - SMa1147 0.90 +0.5 627,286 - -0.4 627,321 - +0.6 627,377 + -0.5 627,378 - -3.2 627,429 + -0.4 627,480 + +0.7 627,481 - -0.3 627,481 - +0.5 627,481 - +1.7 627,499 + -0.4 627,745 - SMa1149 0.32 +1.0 627,776 - SMa1149 0.36 +0.9 627,803 + SMa1149 0.39 +1.0 627,803 + SMa1149 0.39 -0.1 628,092 + SMa1149 0.74 -1.1 628,092 + SMa1149 0.74 -0.1 628,093 - SMa1149 0.74 +0.4 628,093 - SMa1149 0.74 +0.4 628,097 - SMa1149 0.75 +0.7 628,097 - SMa1149 0.75 -1.5 628,311 - +0.1 628,311 - +0.3 628,326 - +0.1 628,328 - -1.1 628,340 + -0.2 628,357 + -0.2 628,357 + -1.7 628,358 - -0.4 628,576 + SMa1151 0.46 +0.3 628,576 + SMa1151 0.46 +0.0 628,631 - SMa1151 0.58 -0.3 628,631 - SMa1151 0.58 -1.1 628,631 - SMa1151 0.58 +0.8 628,631 - SMa1151 0.58 -1.2 628,709 + SMa1151 0.75 -0.8 628,709 + SMa1151 0.75 +0.8 628,709 + SMa1151 0.75 +0.5 628,710 - SMa1151 0.75 +0.7 628,725 + SMa1151 0.79 -0.5 628,727 + SMa1151 0.79 -1.2 628,788 + -1.6 628,789 - +1.8 628,789 - +1.5 628,870 - +0.9 628,870 - -0.3 628,925 + -0.2 628,925 + +1.2 628,925 + +2.0 628,926 - +0.2 628,926 - -1.2 628,926 - +0.7 628,949 + -0.1 629,015 + -0.0 629,015 + +0.3 629,015 + +0.5 629,093 + SMa1153 0.19 +0.5 629,094 - SMa1153 0.19 +0.5 629,094 - SMa1153 0.19 +0.4
Or see this region's nucleotide sequence