Strain Fitness in Sinorhizobium meliloti 1021 around SMa1146

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1142 and SMa1146 are separated by 139 nucleotidesSMa1146 and SMa1147 are separated by 77 nucleotides SMa1142: SMa1142 - FixL-related histidine kinase, at 622,009 to 623,595 SMa1142 SMa1146: SMa1146 - hypothetical protein, at 623,735 to 626,434 SMa1146 SMa1147: SMa1147 - hypothetical protein, at 626,512 to 627,336 SMa1147 Position (kb) 623 624 625 626 627Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 622.763 kb on + strand, within SMa1142at 622.763 kb on + strand, within SMa1142at 622.764 kb on - strand, within SMa1142at 622.764 kb on - strand, within SMa1142at 622.764 kb on - strand, within SMa1142at 622.764 kb on - strand, within SMa1142at 622.764 kb on - strand, within SMa1142at 622.835 kb on + strand, within SMa1142at 622.906 kb on - strand, within SMa1142at 622.937 kb on + strand, within SMa1142at 622.960 kb on + strand, within SMa1142at 622.961 kb on - strand, within SMa1142at 622.961 kb on - strand, within SMa1142at 622.961 kb on - strand, within SMa1142at 623.086 kb on + strand, within SMa1142at 623.115 kb on + strand, within SMa1142at 623.115 kb on + strand, within SMa1142at 623.115 kb on + strand, within SMa1142at 623.116 kb on - strand, within SMa1142at 623.126 kb on - strand, within SMa1142at 623.126 kb on - strand, within SMa1142at 623.127 kb on + strand, within SMa1142at 623.232 kb on + strand, within SMa1142at 623.409 kb on - strand, within SMa1142at 623.409 kb on - strand, within SMa1142at 623.423 kb on + strand, within SMa1142at 623.424 kb on - strand, within SMa1142at 623.494 kb on + strandat 623.548 kb on + strandat 623.618 kb on + strandat 623.618 kb on + strandat 623.624 kb on + strandat 623.634 kb on + strandat 623.635 kb on - strandat 623.638 kb on - strandat 623.638 kb on - strandat 623.912 kb on + strandat 624.006 kb on + strand, within SMa1146at 624.006 kb on + strand, within SMa1146at 624.006 kb on + strand, within SMa1146at 624.007 kb on - strand, within SMa1146at 624.043 kb on + strand, within SMa1146at 624.109 kb on - strand, within SMa1146at 624.257 kb on + strand, within SMa1146at 624.331 kb on - strand, within SMa1146at 624.331 kb on - strand, within SMa1146at 624.366 kb on - strand, within SMa1146at 624.490 kb on + strand, within SMa1146at 624.491 kb on - strand, within SMa1146at 624.491 kb on - strand, within SMa1146at 624.491 kb on - strand, within SMa1146at 624.491 kb on - strand, within SMa1146at 624.491 kb on - strand, within SMa1146at 624.735 kb on + strand, within SMa1146at 624.735 kb on + strand, within SMa1146at 624.736 kb on - strand, within SMa1146at 624.785 kb on - strand, within SMa1146at 624.787 kb on - strand, within SMa1146at 624.787 kb on - strand, within SMa1146at 624.809 kb on + strand, within SMa1146at 625.032 kb on - strand, within SMa1146at 625.067 kb on + strand, within SMa1146at 625.068 kb on - strand, within SMa1146at 625.068 kb on - strand, within SMa1146at 625.260 kb on + strand, within SMa1146at 625.260 kb on + strand, within SMa1146at 625.528 kb on - strand, within SMa1146at 625.755 kb on + strandat 625.950 kb on - strand, within SMa1146at 626.073 kb on + strand, within SMa1146at 626.165 kb on + strandat 626.256 kb on - strandat 626.448 kb on - strandat 626.466 kb on + strandat 626.466 kb on + strandat 626.466 kb on + strandat 626.467 kb on - strandat 626.518 kb on + strandat 626.567 kb on + strandat 626.656 kb on + strand, within SMa1147at 626.702 kb on + strand, within SMa1147at 626.759 kb on + strand, within SMa1147at 626.782 kb on + strand, within SMa1147at 626.782 kb on + strand, within SMa1147at 627.027 kb on + strandat 627.050 kb on + strand, within SMa1147at 627.051 kb on - strand, within SMa1147at 627.059 kb on + strand, within SMa1147at 627.059 kb on + strand, within SMa1147at 627.059 kb on + strand, within SMa1147at 627.121 kb on + strand, within SMa1147at 627.141 kb on - strand, within SMa1147at 627.196 kb on - strand, within SMa1147at 627.252 kb on + strand, within SMa1147at 627.252 kb on + strand, within SMa1147at 627.252 kb on + strand, within SMa1147at 627.253 kb on - strand, within SMa1147at 627.253 kb on - strand, within SMa1147at 627.253 kb on - strand, within SMa1147at 627.253 kb on - strand, within SMa1147at 627.253 kb on - strand, within SMa1147at 627.253 kb on - strand, within SMa1147at 627.286 kb on - strandat 627.321 kb on - strandat 627.377 kb on + strandat 627.378 kb on - strandat 627.429 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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622,763 + SMa1142 0.48 -0.1
622,763 + SMa1142 0.48 -0.8
622,764 - SMa1142 0.48 -0.9
622,764 - SMa1142 0.48 +0.6
622,764 - SMa1142 0.48 -0.0
622,764 - SMa1142 0.48 -0.1
622,764 - SMa1142 0.48 +0.0
622,835 + SMa1142 0.52 +0.5
622,906 - SMa1142 0.57 -0.5
622,937 + SMa1142 0.58 -0.9
622,960 + SMa1142 0.60 +0.4
622,961 - SMa1142 0.60 +0.4
622,961 - SMa1142 0.60 +0.0
622,961 - SMa1142 0.60 -0.1
623,086 + SMa1142 0.68 -1.1
623,115 + SMa1142 0.70 +0.1
623,115 + SMa1142 0.70 +0.4
623,115 + SMa1142 0.70 +1.8
623,116 - SMa1142 0.70 +0.7
623,126 - SMa1142 0.70 +0.3
623,126 - SMa1142 0.70 +0.3
623,127 + SMa1142 0.70 +0.3
623,232 + SMa1142 0.77 +0.5
623,409 - SMa1142 0.88 -0.6
623,409 - SMa1142 0.88 +1.2
623,423 + SMa1142 0.89 +1.5
623,424 - SMa1142 0.89 +0.2
623,494 + +2.1
623,548 + -0.2
623,618 + +0.5
623,618 + -0.1
623,624 + +0.2
623,634 + +0.5
623,635 - +0.1
623,638 - +0.7
623,638 - -0.0
623,912 + +0.4
624,006 + SMa1146 0.10 +0.4
624,006 + SMa1146 0.10 +0.7
624,006 + SMa1146 0.10 -0.2
624,007 - SMa1146 0.10 -0.6
624,043 + SMa1146 0.11 +0.1
624,109 - SMa1146 0.14 +0.7
624,257 + SMa1146 0.19 +0.6
624,331 - SMa1146 0.22 -0.1
624,331 - SMa1146 0.22 -0.2
624,366 - SMa1146 0.23 +0.3
624,490 + SMa1146 0.28 +1.1
624,491 - SMa1146 0.28 -0.9
624,491 - SMa1146 0.28 +0.4
624,491 - SMa1146 0.28 +0.6
624,491 - SMa1146 0.28 +1.1
624,491 - SMa1146 0.28 -1.9
624,735 + SMa1146 0.37 -1.5
624,735 + SMa1146 0.37 -0.5
624,736 - SMa1146 0.37 -1.0
624,785 - SMa1146 0.39 +0.2
624,787 - SMa1146 0.39 +1.6
624,787 - SMa1146 0.39 -0.0
624,809 + SMa1146 0.40 -0.5
625,032 - SMa1146 0.48 -0.2
625,067 + SMa1146 0.49 +0.5
625,068 - SMa1146 0.49 +0.3
625,068 - SMa1146 0.49 -1.9
625,260 + SMa1146 0.56 +0.9
625,260 + SMa1146 0.56 +0.3
625,528 - SMa1146 0.66 +0.7
625,755 + -0.1
625,950 - SMa1146 0.82 +0.9
626,073 + SMa1146 0.87 -0.8
626,165 + -1.5
626,256 - +1.8
626,448 - +0.3
626,466 + -0.5
626,466 + -1.0
626,466 + +0.0
626,467 - +0.9
626,518 + +0.4
626,567 + +2.5
626,656 + SMa1147 0.17 +1.5
626,702 + SMa1147 0.23 -0.0
626,759 + SMa1147 0.30 +0.0
626,782 + SMa1147 0.33 -1.0
626,782 + SMa1147 0.33 +0.1
627,027 + -0.9
627,050 + SMa1147 0.65 +0.6
627,051 - SMa1147 0.65 +0.1
627,059 + SMa1147 0.66 -1.9
627,059 + SMa1147 0.66 +0.7
627,059 + SMa1147 0.66 -0.7
627,121 + SMa1147 0.74 +1.5
627,141 - SMa1147 0.76 +0.0
627,196 - SMa1147 0.83 +0.3
627,252 + SMa1147 0.90 +0.1
627,252 + SMa1147 0.90 +0.3
627,252 + SMa1147 0.90 +0.3
627,253 - SMa1147 0.90 +0.7
627,253 - SMa1147 0.90 +0.7
627,253 - SMa1147 0.90 +0.2
627,253 - SMa1147 0.90 -0.5
627,253 - SMa1147 0.90 -1.7
627,253 - SMa1147 0.90 +0.5
627,286 - -0.4
627,321 - +0.6
627,377 + -0.5
627,378 - -3.2
627,429 + -0.4

Or see this region's nucleotide sequence