Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1136 and SMa1138 are separated by 51 nucleotides SMa1138 and SMa1139 overlap by 7 nucleotides SMa1139 and SMa1141 are separated by 128 nucleotides SMa1141 and SMa1142 overlap by 1 nucleotides
SMa1136: SMa1136 - hypothetical protein, at 619,852 to 620,313
SMa1136
SMa1138: SMa1138 - hypothetical protein, at 620,365 to 620,856
SMa1138
SMa1139: SMa1139 - hypothetical protein, at 620,850 to 621,116
SMa1139
SMa1141: SMa1141 - FNR/CRP family transcriptional regulator, at 621,245 to 622,009
SMa1141
SMa1142: SMa1142 - FixL-related histidine kinase, at 622,009 to 623,595
SMa1142
Position (kb) 621
622
623 Strain fitness (log2 ratio) -2
-1
0
1
2 at 620.294 kb on + strand at 620.305 kb on + strand at 620.317 kb on - strand at 620.590 kb on - strand, within SMa1138 at 620.653 kb on + strand, within SMa1138 at 620.654 kb on - strand, within SMa1138 at 620.682 kb on - strand, within SMa1138 at 620.793 kb on - strand, within SMa1138 at 620.793 kb on - strand, within SMa1138 at 620.867 kb on - strand at 620.901 kb on + strand, within SMa1139 at 621.153 kb on + strand at 621.153 kb on + strand at 621.153 kb on + strand at 621.158 kb on + strand at 621.159 kb on - strand at 621.163 kb on + strand at 621.164 kb on - strand at 621.262 kb on + strand at 621.331 kb on - strand, within SMa1141 at 621.403 kb on + strand, within SMa1141 at 621.424 kb on + strand, within SMa1141 at 621.424 kb on + strand, within SMa1141 at 621.522 kb on - strand, within SMa1141 at 621.522 kb on - strand, within SMa1141 at 621.522 kb on - strand, within SMa1141 at 621.525 kb on + strand, within SMa1141 at 621.528 kb on - strand, within SMa1141 at 621.528 kb on - strand, within SMa1141 at 621.832 kb on + strand, within SMa1141 at 621.833 kb on - strand, within SMa1141 at 621.834 kb on + strand, within SMa1141 at 621.959 kb on + strand at 621.974 kb on - strand at 622.063 kb on - strand at 622.143 kb on - strand at 622.202 kb on - strand, within SMa1142 at 622.226 kb on + strand, within SMa1142 at 622.227 kb on - strand, within SMa1142 at 622.289 kb on - strand, within SMa1142 at 622.289 kb on - strand, within SMa1142 at 622.289 kb on - strand, within SMa1142 at 622.607 kb on + strand, within SMa1142 at 622.608 kb on - strand, within SMa1142 at 622.661 kb on + strand, within SMa1142 at 622.763 kb on + strand, within SMa1142 at 622.763 kb on + strand, within SMa1142 at 622.764 kb on - strand, within SMa1142 at 622.764 kb on - strand, within SMa1142 at 622.764 kb on - strand, within SMa1142 at 622.764 kb on - strand, within SMa1142 at 622.764 kb on - strand, within SMa1142 at 622.835 kb on + strand, within SMa1142 at 622.906 kb on - strand, within SMa1142 at 622.937 kb on + strand, within SMa1142 at 622.960 kb on + strand, within SMa1142 at 622.961 kb on - strand, within SMa1142 at 622.961 kb on - strand, within SMa1142 at 622.961 kb on - strand, within SMa1142
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 620,294 + -0.1 620,305 + +1.2 620,317 - -0.4 620,590 - SMa1138 0.46 +1.5 620,653 + SMa1138 0.59 +0.5 620,654 - SMa1138 0.59 +0.7 620,682 - SMa1138 0.64 +0.6 620,793 - SMa1138 0.87 +0.5 620,793 - SMa1138 0.87 -0.9 620,867 - +1.5 620,901 + SMa1139 0.19 -1.5 621,153 + -2.5 621,153 + +0.2 621,153 + -0.4 621,158 + -0.5 621,159 - +1.5 621,163 + +1.5 621,164 - +1.1 621,262 + +0.2 621,331 - SMa1141 0.11 -0.1 621,403 + SMa1141 0.21 +0.3 621,424 + SMa1141 0.23 +0.4 621,424 + SMa1141 0.23 +0.1 621,522 - SMa1141 0.36 +0.1 621,522 - SMa1141 0.36 +0.5 621,522 - SMa1141 0.36 +0.4 621,525 + SMa1141 0.37 +1.9 621,528 - SMa1141 0.37 +0.6 621,528 - SMa1141 0.37 +0.0 621,832 + SMa1141 0.77 +0.1 621,833 - SMa1141 0.77 +0.7 621,834 + SMa1141 0.77 +0.5 621,959 + +0.3 621,974 - +1.2 622,063 - -0.2 622,143 - -0.5 622,202 - SMa1142 0.12 +0.3 622,226 + SMa1142 0.14 +0.6 622,227 - SMa1142 0.14 -0.3 622,289 - SMa1142 0.18 +0.1 622,289 - SMa1142 0.18 +0.6 622,289 - SMa1142 0.18 +0.4 622,607 + SMa1142 0.38 -0.6 622,608 - SMa1142 0.38 +0.7 622,661 + SMa1142 0.41 -1.3 622,763 + SMa1142 0.48 -0.1 622,763 + SMa1142 0.48 -0.8 622,764 - SMa1142 0.48 -0.9 622,764 - SMa1142 0.48 +0.6 622,764 - SMa1142 0.48 -0.0 622,764 - SMa1142 0.48 -0.1 622,764 - SMa1142 0.48 +0.0 622,835 + SMa1142 0.52 +0.5 622,906 - SMa1142 0.57 -0.5 622,937 + SMa1142 0.58 -0.9 622,960 + SMa1142 0.60 +0.4 622,961 - SMa1142 0.60 +0.4 622,961 - SMa1142 0.60 +0.0 622,961 - SMa1142 0.60 -0.1
Or see this region's nucleotide sequence