Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1124 and SMa1126 are separated by 19 nucleotides SMa1126 and SMa1128 are separated by 53 nucleotides
SMa1124: SMa1124 - hypothetical protein, at 612,555 to 613,754
SMa1124
SMa1126: SMa1126 - Protease, at 613,774 to 614,892
SMa1126
SMa1128: SMa1128 - DegP4 protease like protein, at 614,946 to 616,274
SMa1128
Position (kb) 613
614
615 Strain fitness (log2 ratio) -1
0
1
2 at 613.038 kb on + strand, within SMa1124 at 613.082 kb on - strand, within SMa1124 at 613.740 kb on - strand at 613.869 kb on - strand at 614.146 kb on + strand, within SMa1126 at 614.255 kb on + strand, within SMa1126 at 614.290 kb on - strand, within SMa1126 at 614.290 kb on - strand, within SMa1126 at 614.291 kb on + strand, within SMa1126 at 614.291 kb on + strand, within SMa1126 at 614.292 kb on - strand, within SMa1126 at 614.292 kb on - strand, within SMa1126 at 614.292 kb on - strand, within SMa1126 at 614.292 kb on - strand, within SMa1126 at 614.429 kb on - strand, within SMa1126 at 614.704 kb on + strand, within SMa1126 at 614.759 kb on - strand, within SMa1126 at 614.759 kb on - strand, within SMa1126 at 614.842 kb on + strand at 614.843 kb on - strand at 614.843 kb on - strand at 614.906 kb on + strand at 614.906 kb on + strand at 615.076 kb on + strand at 615.077 kb on - strand at 615.434 kb on + strand, within SMa1128 at 615.435 kb on - strand, within SMa1128 at 615.435 kb on - strand, within SMa1128 at 615.514 kb on + strand, within SMa1128 at 615.588 kb on - strand, within SMa1128 at 615.701 kb on - strand, within SMa1128 at 615.709 kb on + strand, within SMa1128 at 615.723 kb on + strand, within SMa1128 at 615.853 kb on - strand, within SMa1128
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 613,038 + SMa1124 0.40 -0.2 613,082 - SMa1124 0.44 -0.2 613,740 - -0.6 613,869 - +0.1 614,146 + SMa1126 0.33 +1.1 614,255 + SMa1126 0.43 +0.6 614,290 - SMa1126 0.46 +0.0 614,290 - SMa1126 0.46 +0.1 614,291 + SMa1126 0.46 +0.6 614,291 + SMa1126 0.46 +0.2 614,292 - SMa1126 0.46 +1.1 614,292 - SMa1126 0.46 +0.3 614,292 - SMa1126 0.46 -0.4 614,292 - SMa1126 0.46 +0.5 614,429 - SMa1126 0.59 -0.1 614,704 + SMa1126 0.83 +1.0 614,759 - SMa1126 0.88 +0.5 614,759 - SMa1126 0.88 +0.3 614,842 + +0.1 614,843 - +2.2 614,843 - -0.3 614,906 + +0.2 614,906 + -0.2 615,076 + +0.8 615,077 - +0.4 615,434 + SMa1128 0.37 -0.7 615,435 - SMa1128 0.37 +1.2 615,435 - SMa1128 0.37 +0.0 615,514 + SMa1128 0.43 -0.0 615,588 - SMa1128 0.48 -0.8 615,701 - SMa1128 0.57 -0.4 615,709 + SMa1128 0.57 +0.5 615,723 + SMa1128 0.58 -0.3 615,853 - SMa1128 0.68 -1.3
Or see this region's nucleotide sequence