Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1009 and SMa1010 are separated by 130 nucleotides SMa1010 and SMa1011 are separated by 42 nucleotides SMa1011 and SMa1013 are separated by 252 nucleotides
SMa1009: SMa1009 - Heavy metal binding protein, at 559,107 to 559,328
SMa1009
SMa1010: SMa1010 - hypothetical protein, at 559,459 to 559,965
SMa1010
SMa1011: SMa1011 - hypothetical protein, at 560,008 to 560,433
SMa1011
SMa1013: SMa1013 - ATPase P, at 560,686 to 563,166
SMa1013
Position (kb) 560
561 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 559.104 kb on + strand at 559.110 kb on + strand at 559.121 kb on + strand at 559.122 kb on - strand at 559.122 kb on - strand at 559.150 kb on + strand, within SMa1009 at 559.151 kb on - strand, within SMa1009 at 559.284 kb on + strand, within SMa1009 at 559.284 kb on + strand, within SMa1009 at 559.284 kb on + strand, within SMa1009 at 559.285 kb on - strand, within SMa1009 at 559.286 kb on + strand, within SMa1009 at 559.286 kb on + strand, within SMa1009 at 559.447 kb on - strand at 559.460 kb on + strand at 559.546 kb on + strand, within SMa1010 at 559.546 kb on + strand, within SMa1010 at 559.546 kb on + strand, within SMa1010 at 559.546 kb on + strand, within SMa1010 at 559.547 kb on - strand, within SMa1010 at 559.547 kb on - strand, within SMa1010 at 559.547 kb on - strand, within SMa1010 at 559.547 kb on - strand, within SMa1010 at 559.551 kb on - strand, within SMa1010 at 559.551 kb on - strand, within SMa1010 at 559.551 kb on - strand, within SMa1010 at 559.612 kb on + strand, within SMa1010 at 559.613 kb on - strand, within SMa1010 at 560.027 kb on + strand at 560.028 kb on - strand at 560.028 kb on - strand at 560.031 kb on + strand at 560.032 kb on - strand at 560.204 kb on + strand, within SMa1011 at 560.205 kb on - strand, within SMa1011 at 560.205 kb on - strand, within SMa1011 at 560.205 kb on - strand, within SMa1011 at 560.260 kb on + strand, within SMa1011 at 560.260 kb on + strand, within SMa1011 at 560.331 kb on - strand, within SMa1011 at 560.331 kb on - strand, within SMa1011 at 560.331 kb on - strand, within SMa1011 at 560.375 kb on + strand, within SMa1011 at 560.375 kb on + strand, within SMa1011 at 560.375 kb on + strand, within SMa1011 at 560.414 kb on + strand at 560.432 kb on - strand at 560.539 kb on - strand at 560.567 kb on - strand at 560.588 kb on + strand at 560.651 kb on + strand at 560.733 kb on + strand at 561.102 kb on - strand, within SMa1013 at 561.222 kb on + strand, within SMa1013 at 561.223 kb on - strand, within SMa1013 at 561.272 kb on + strand, within SMa1013 at 561.272 kb on + strand, within SMa1013 at 561.294 kb on + strand at 561.309 kb on + strand, within SMa1013 at 561.316 kb on + strand, within SMa1013 at 561.316 kb on + strand, within SMa1013 at 561.316 kb on + strand, within SMa1013 at 561.316 kb on + strand, within SMa1013 at 561.316 kb on + strand, within SMa1013 at 561.316 kb on + strand, within SMa1013 at 561.317 kb on - strand, within SMa1013 at 561.317 kb on - strand, within SMa1013 at 561.317 kb on - strand, within SMa1013 at 561.318 kb on + strand, within SMa1013
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 559,104 + +0.3 559,110 + +0.1 559,121 + +0.8 559,122 - +3.3 559,122 - -0.1 559,150 + SMa1009 0.19 +0.4 559,151 - SMa1009 0.20 -0.8 559,284 + SMa1009 0.80 -0.0 559,284 + SMa1009 0.80 -1.1 559,284 + SMa1009 0.80 -0.2 559,285 - SMa1009 0.80 -0.9 559,286 + SMa1009 0.81 -0.2 559,286 + SMa1009 0.81 -0.7 559,447 - +0.4 559,460 + +0.2 559,546 + SMa1010 0.17 -1.0 559,546 + SMa1010 0.17 -0.1 559,546 + SMa1010 0.17 -0.8 559,546 + SMa1010 0.17 -0.3 559,547 - SMa1010 0.17 -0.2 559,547 - SMa1010 0.17 -1.4 559,547 - SMa1010 0.17 -1.7 559,547 - SMa1010 0.17 +0.5 559,551 - SMa1010 0.18 +0.3 559,551 - SMa1010 0.18 -0.3 559,551 - SMa1010 0.18 -1.1 559,612 + SMa1010 0.30 +0.5 559,613 - SMa1010 0.30 +0.5 560,027 + +1.1 560,028 - -0.1 560,028 - +0.4 560,031 + +0.0 560,032 - -0.8 560,204 + SMa1011 0.46 -1.6 560,205 - SMa1011 0.46 -1.3 560,205 - SMa1011 0.46 -0.1 560,205 - SMa1011 0.46 +0.8 560,260 + SMa1011 0.59 +0.2 560,260 + SMa1011 0.59 -0.6 560,331 - SMa1011 0.76 -0.4 560,331 - SMa1011 0.76 -0.2 560,331 - SMa1011 0.76 -0.2 560,375 + SMa1011 0.86 -1.4 560,375 + SMa1011 0.86 -0.0 560,375 + SMa1011 0.86 -0.6 560,414 + +0.2 560,432 - +0.4 560,539 - -0.8 560,567 - -2.0 560,588 + +0.5 560,651 + +0.0 560,733 + -0.3 561,102 - SMa1013 0.17 -0.2 561,222 + SMa1013 0.22 +0.6 561,223 - SMa1013 0.22 -0.5 561,272 + SMa1013 0.24 -0.5 561,272 + SMa1013 0.24 +0.2 561,294 + +0.2 561,309 + SMa1013 0.25 +1.1 561,316 + SMa1013 0.25 +0.3 561,316 + SMa1013 0.25 -0.8 561,316 + SMa1013 0.25 -0.1 561,316 + SMa1013 0.25 +0.7 561,316 + SMa1013 0.25 +0.2 561,316 + SMa1013 0.25 +0.2 561,317 - SMa1013 0.25 -0.5 561,317 - SMa1013 0.25 +0.1 561,317 - SMa1013 0.25 +0.4 561,318 + SMa1013 0.25 -0.1
Or see this region's nucleotide sequence