Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0643 and SMa0645 are separated by 16 nucleotides SMa0645 and SMa0647 are separated by 117 nucleotides SMa0647 and SMa0649 overlap by 20 nucleotides SMa0649 and SMa5027 are separated by 589 nucleotides
SMa0643: SMa0643 - transposase, at 345,407 to 345,667
SMa0643
SMa0645: SMa0645 - hypothetical protein, at 345,684 to 345,992
SMa0645
SMa0647: SMa0647 - hypothetical protein, at 346,110 to 346,361
SMa0647
SMa0649: SMa0649 - hypothetical protein, at 346,342 to 346,659
SMa0649
SMa5027: SMa5027 - hypothetical protein, at 347,249 to 347,851
SMa5027
Position (kb) 346
347 Strain fitness (log2 ratio) -2
-1
0
1 at 345.114 kb on + strand at 345.124 kb on - strand at 345.157 kb on + strand at 345.178 kb on + strand at 345.178 kb on + strand at 345.179 kb on - strand at 345.280 kb on + strand at 345.380 kb on + strand at 345.594 kb on - strand, within SMa0643 at 345.878 kb on - strand, within SMa0645 at 345.885 kb on - strand, within SMa0645 at 346.063 kb on + strand at 346.063 kb on + strand at 346.064 kb on - strand at 346.189 kb on + strand, within SMa0647 at 346.701 kb on + strand at 346.832 kb on + strand at 346.833 kb on - strand at 346.833 kb on - strand at 346.850 kb on - strand at 346.915 kb on + strand at 347.223 kb on + strand at 347.224 kb on - strand at 347.229 kb on + strand at 347.320 kb on + strand, within SMa5027 at 347.320 kb on + strand, within SMa5027 at 347.321 kb on - strand, within SMa5027
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 345,114 + +0.3 345,124 - -0.8 345,157 + +0.0 345,178 + -0.5 345,178 + -0.2 345,179 - +0.6 345,280 + +0.5 345,380 + +0.6 345,594 - SMa0643 0.72 -0.4 345,878 - SMa0645 0.63 -0.1 345,885 - SMa0645 0.65 -0.3 346,063 + +0.4 346,063 + +0.1 346,064 - -1.4 346,189 + SMa0647 0.31 +0.4 346,701 + -2.4 346,832 + +0.7 346,833 - +1.1 346,833 - +1.6 346,850 - -1.4 346,915 + -1.2 347,223 + -0.4 347,224 - -0.8 347,229 + -0.7 347,320 + SMa5027 0.12 +0.2 347,320 + SMa5027 0.12 +0.3 347,321 - SMa5027 0.12 -1.2
Or see this region's nucleotide sequence